|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR27
(D)
,
OCR27-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rihC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rihC
Search strains by all related name:
rihC b0030 ECK0031 JW0028 yaaF
|
General information (Go to Linear View: )
|
|
Gene Name
|
rihC
|
|
Alternative name
|
b0030,ECK0031,JW0028,yaaF
|
|
Location, Length
|
27,293 - 28,207
(
+
)
;
0.59
min
;
915
(bp) ,
304
(aa)
|
|
Product
|
ribonucleoside hydrolase 3
|
|
Operon Name
|
rihC
|
|
Note
|
GO_process: GO:0009226 - nucleotide-sugar biosynthetic process
|
|
Function
|
|
|
Gene Ontology
|
GO:0006144
;
purine base metabolic process ( rihC )
GO:0006206
;
pyrimidine base metabolic process ( rihC )
GO:0008152
;
metabolic process ( rihC )
GO:0016787
;
hydrolase activity ( rihC )
GO:0016798
;
hydrolase activity, acting on glycosyl bonds ( rihC )
|
|
PID
|
1786213
|
EC number
(KEGG Pathway)
|
3.2.2.-
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YAAF_ECOLI
(
P22564
)
|
|
- Protein name
|
Hypothetical protein yaaF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yaaF; OrderedLocusNames=b0030;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rihC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania Major
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Nonspecific ribonucleoside hydrolase rihC
|
|
PSI-BLAST
|
Pyrimidine-specific ribonucleoside hydrolase rihA
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
ribonucleoside hydrolase 3 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
IUNH
|
| Sequences |
Amino acid
FASTA format
|
0001 MRLPIFLDTD PGIDDAVAIA AAIFAPELDL QLMTTVAGNV SVEKTTRNAL QLLHFWNAEI PLAQGAAVPL
0071 VRAPRDAASV HGESGMAGYD FVEHNRKPLG IPAFLAIRDA LMRAPEPVTL VAIGPLTNIA LLLSQCPECK
0141 PYIRRLVIMG GSAGRGNCTP NAEFNIAADP EAAACVFRSG IEIVMCGLDV TNQAILTPDY LSTLPQLNRT
0211 GKMLHALFSH YRSGSMQSGL RMHDLCAIAW LVRPDLFTLK PCFVAVETQG EFTSGTTVVD IDGCLGKPAN
0281 VQVALDLDVK GFQQWVAEVL ALAS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAGAGCTGCG TGTCGATATT CGTGAAGTCG
-070 ATTAAGTCAT TAGCAGCCTA AGTTATGCGA AAATGCCGGT CTTGTTACCG GCATTTTTTA TGGAGAAAAC
0001 atgcgtttac ctatcttcct cgatactgac cccggcattg acgatgccgt cgccattgcc gccgcgattt
0071 ttgcacccga actcgacctg caactgatga ccaccgtcgc gggtaatgtc tcggttgaga aaactacccg
0141 caatgccctg caactgctgc atttctggaa tgcggagatt ccgctcgccc aaggggccgc tgtgccactg
0211 gtacgcgcac cgcgtgatgc ggcatctgtg cacggcgaat cgggaatggc tggctacgac tttgttgagc
0281 acaaccgaaa gccgctcggg ataccggcgt ttctggcgat tcgggatgcc ctgatgcgtg caccagagcc
0351 tgttaccctg gtggccatcg gcccgttaac caatattgcg ctgttacttt cacaatgccc ggaatgcaag
0421 ccgtatattc gccgtctggt gatcatgggt ggttctgccg gacgcggcaa ctgtacgcca aacgccgagt
0491 ttaatattgc tgccgatcca gaagctgctg cctgtgtctt ccgcagtggt attgaaatcg tcatgtgcgg
0561 tttggatgtc accaatcagg caatattaac tcctgactat ctctctacac tgccgcagtt aaaccgtacc
0631 gggaaaatgc ttcacgccct gtttagccac taccgtagcg gcagtatgca aagcggcttg cgaatgcacg
0701 atctctgcgc catcgcctgg ctggtgcgcc cggacctgtt cactctcaaa ccctgttttg tggcagtgga
0771 aactcagggc gaatttacct caggcacgac ggtggttgat atcgacggtt gcctgggcaa gccagccaat
0841 gtacaggtgg cattggatct ggatgtgaaa ggcttccagc agtgggtggc tgaggtgctg gctctggcgt
0911 cgtaaCCTGT CACATGTTAT TGGCATGCAG TCATTCATCG ACTCATGCCT TTCACTGATA TCCCTCCCTG
0981 TTTATCATTA ATTTCTAATT ATCAGCGTTT TTGGC
|
