Program blastn (DNA query vs. DNA database) blastx (DNA query [translated into protein] vs. Protein database) tblastx (DNA query [translated into protein] vs. DNA database [translated into protein]) blastp (Protein query vs. Protein database) tblastn (Protein query vs. DNA database [translated into protein]) Database : E.coli(K-12 MG1655) Genome U00096.2  ( DNA )  [ 1 sequence ]  ( 2006.7.2 updated) E.coli(K-12 MG1655) Genome U00096.1  ( DNA )  [ 1 sequence ]  ( 2002.11.22 updated) E.coli(K-12 MG1655) Genes in U00096.2 - all  ( DNA )  [ 4488 sequences ]  ( 2006.7.2 updated) E.coli(K-12 MG1655) Protein in U00096.2 - all  ( Protein )  [ 4302 sequences ]  ( 2006.7.2 updated) E.coli(K-12 MG1655) Genes in U00096.2 - essential  ( DNA )  [ 302 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Protein in U00096.2 - essential  ( Protein )  [ 287 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Genes in U00096.2 - non-essential  ( DNA )  [ 4112 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Protein in U00096.2 - non-essential  ( Protein )  [ 4012 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Genes in Minimal Genome of U00096.2 - all  ( DNA )  [ 3113 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Protein in Minimal Genome of U00096.2 - all  ( Protein )  [ 3003 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Genes in Minimal Genome of U00096.2 - non-essential  ( DNA )  [ 2811 sequences ]  ( 2007.2.26 updated) E.coli(K-12 MG1655) Protein in Minimal Genome of U00096.2 - non-essential  ( Protein )  [ 2716 sequences ]  ( 2007.2.26 updated) E.coli(O157:H7 EDL933) Genome  ( DNA )  [ 1 sequence ]  ( 2006.7.19 updated) E.coli(O157:H7 EDL933) Protein  ( Protein )  [ 5324 sequences ]  ( 2006.7.19 updated) E.coli(O157:H7 str. Sakai) Genome  ( DNA )  [ 1 sequence ]  ( 2006.3.23 updated) E.coli(O157:H7 str. Sakai) Protein  ( Protein )  [ 5253 sequences ]  ( 2006.3.23 updated) kohara clone (cut from U00096.1)  ( DNA )  [ 464 sequences ]  ( 2008.2.15 updated) kohara clone (cut from U00096.2)  ( DNA )  [ 464 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Genes in U00096.2 - all  ( DNA )  [ 4466 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Protein in U00096.2 - all  ( Protein )  [ 4466 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Genes in U00096.2 - essential  ( DNA )  [ 302 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Protein in U00096.2 - essential  ( Protein )  [ 302 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Genes in U00096.2 - non-essential  ( DNA )  [ 4160 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Protein in U00096.2 - non-essential  ( Protein )  [ 4160 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Genes in Minimal Genome of U00096.2 - all  ( DNA )  [ 3184 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Protein in Minimal Genome of U00096.2 - all  ( Protein )  [ 3184 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Genes in Minimal Genome of U00096.2 - non-essential  ( DNA )  [ 2878 sequences ]  ( 2008.2.15 updated) E.coli(K-12 MG1655) Protein in Minimal Genome of U00096.2 - non-essential  ( Protein )  [ 2878 sequences ]  ( 2008.2.15 updated) E.coli(W3110) Genome AP009048.1  ( DNA )  [ 1 sequence ]  ( 2008.6.11 updated)   NOTICE: The database list was rearranged in a different order.( Sep 11, 2008 ) Please specify the sequence data to reference.   File Upload :   or COPY & PASTE : The following options will be set up if necessary. Options for BLAST Search Filter ON OFF Expect Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Query Genetic Codes Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15) Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF Other options : Options for BLASTScope Sort Hits order by : Hit Number bit score query from definition alignment length Number of Hits : All Hits   Limit : Hits Number of HSPs : All HSPs   Limit : HSPs Limit results by alignment length : >  Limit results by range of query sequence : - Image width :