|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(lpcA-proB)70
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ykfJ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ykfJ
Search strains by all related name:
ykfJ b0235 ECK0236 f104 JW0225 o88
|
General information (Go to Linear View: )
|
|
Gene Name
|
ykfJ
|
|
Alternative name
|
b0235,ECK0236,f104,JW0225,o88
|
|
Location, Length
|
253,479 - 253,685
(
+
)
;
5.46
min
;
207
(bp) ,
68
(aa)
|
|
Product
|
|
|
Operon Name
|
ykfJ-prfH
|
|
Note
|
pseudogene
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YKFJ_ECOLI
(
P75675
)
|
|
- Protein name
|
Hypothetical protein ykfJ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ykfJ; OrderedLocusNames=b0235;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ykfJ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus Horikoshii
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ykfJ
|
|
PSI-BLAST
|
Hypothetical protein ykfJ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein SDY_0482 [Shigella dysenteriae Sd197]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
MYRISTYL
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AGTGAATCGC CAGGAGCTTA CATAAGTAAG
-070 TGACTGGGGT GAACGAACGC AGTCGCAGTA CATGCAACTT GAAGTATGAC GAGTATAAAT GGAATGGTAC
0001 atgggcaaat atattcgtcc cttatccgat gcggtattta ccatcgcatc tgatgacctg tggatcgaga
0071 gtttagcgat ccaacaatta cacaccacgg caaatttacc caacatgcag cgcgtagtgg ggatgccaga
0141 tttacacccc ggacgcggct acccgattgg cgcagcgttc ttctctgttg gtcgttttta cccggcaAGA
0211 CGTCGCGGTA ACGGTGCTGG AAACAGAAAC GGGCCGCTAC TCTGACACAC TGCGTTCGGC GCTGGTTTCT
0281 CTCGATGGCG ATAACGCATG GGCATTA
|
