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PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
abgR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
abgR
Search strains by all related name:
abgR b1339 ECK1335 JW1333 o302 o302c ydaK
|
General information (Go to Linear View: )
|
|
Gene Name
|
abgR
|
|
Alternative name
|
b1339,ECK1335,JW1333,o302,o302c,ydaK
|
|
Location, Length
|
1,402,765 - 1,403,673
(
+
)
;
30.23
min
;
909
(bp) ,
302
(aa)
|
|
Product
|
putative DNA-binding transcriptional regulator of abgABT operon
|
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Operon Name
|
abgR
|
|
Note
|
putative transcriptional regulator LYSR-type; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006350 - transcription
|
|
Function
|
putative regulator; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( abgR )
GO:0003700
;
transcription factor activity ( abgR )
GO:0006350
;
transcription ( abgR )
GO:0006355
;
regulation of transcription, DNA-dependent ( abgR )
|
|
PID
|
1787601
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
TDCA_ECOLI
(
P11036
)
|
|
- Protein name
|
HTH-type transcriptional regulator tdcA
|
|
- Synonyms
|
Tdc operon transcriptional activator
|
|
- Gene name
|
Name=tdcA; OrderedLocusNames=b3118, z4470, ECs3998, SF3158, S3370;
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| Sequences |
Amino acid
FASTA format
|
0001 MAFQVKIHQI RAFVEVARQG SIRGASRMLN MSQPALSKSI QELEEGLAAQ LFFRRSKGVT LTDAGESFYQ
0071 HASLILEELR AAQEDIRQRQ GQLAGQINIG MGASISRSLM PAVISRFHQQ HPQVKVRIME GQLVSMINEL
0141 RQGELDFTIN TYYQGPYDHE FTFEKLLEKQ FAIFCRPGHP AIGARSIKQL LDYSWTMPTP HGSYYKQLSE
0211 LLDDQAQTPQ VGVVCETFSA CISLVAKSDF LSKLPEEMGC DPLHGQGLVM LPVSEILPKA AYYLIQRRDS
0281 RQTPLTASLI TQFRRECGYL QS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCACAGTTTT AACCGTTCAT AAATTACCCT
-070 GACACAATCA TCTGCATTAA AGTAGATGCC AGTTTCTTTG GTCTGATAAA TAACGGTTAT CGGTGGCGTC
0001 atggcttttc aggtaaaaat tcatcaaatt cgggcttttg ttgaagtggc tcgtcagggc agcattcgcg
0071 gagcgagccg aatgttgaat atgtcgcaac cggcactgag taaatctatt caggagctag aagaagggtt
0141 agcggcgcaa ctcttttttc gccgtagtaa aggcgtgacg ttaactgatg ccggtgaaag tttttatcag
0211 cacgccagtc taattcttga agagctgcgc gcagcccaag aggatattcg ccaacgacaa gggcaactgg
0281 cagggcagat taatatcggc atgggggcca gtatttcccg cagtctgatg ccagctgtca tatctcgttt
0351 tcatcagcag catccgcagg taaaagtacg cattatggaa gggcaactgg tgtcgatgat taatgaattg
0421 cgtcagggag aattggattt caccatcaat acctattatc agggaccgta cgaccacgaa tttacttttg
0491 agaaattact ggaaaagcaa ttcgcgatct tttgccgccc gggacacccc gccattggtg cccgttcgat
0561 caaacagtta ctggattaca gctggacaat gccgacgcca cacggcagct actacaaaca gttgagtgaa
0631 ttgcttgacg atcaggcgca aacgccacag gtcggtgtag tctgcgagac gttctcagcc tgtatcagtc
0701 tggtggcaaa aagcgatttt ctcagcaaac tgcctgaaga aatgggctgc gatcccttgc acggacaggg
0771 gctggtgatg ttgccggtta gcgaaatttt accgaaagcg gcctattatt tgattcagcg gcgtgatagt
0841 cgccagacac cactgaccgc gtcattaatc acgcaattcc ggcgagaatg cggctatctg caaagttaaA
0911 ACTGCATAAA AAAATAGAGT CTGTCGACAT CCGCCAGACT CTACAGTACA CACAGCAGTG CATCCGCGTC
0981 TTAAATCCGG CATTGTCTCC TCTGCGCCG
|
