|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
fnrS
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
fnrS
Search strains by all related name:
fnrS b4699 ECK4511 rydA
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
fnrS
|
|
Alternative name
|
b4699,ECK4511,rydA
|
|
Location, Length
|
1,407,153 - 1,407,274
(
+
)
;
30.33
min
;
122
(bp) ,
|
|
Product
|
FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation
|
|
Operon Name
|
|
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Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGTAACAAAA GCAATTTTTC CGGCTGTCTG
-070 TATACAAAAA CGCCGCAAAG TTTGAGCGAA GTCAATAAAC TCTCTACCCA TTCAGGGCAA TATCTCTCTT
0001 gcaggtgaat gcaacgtcaa gcgatgggcg ttgcgctcca tattgtctta cttccttttt tgaattactg
0071 catagcacaa ttgattcgta cgacgccgac tttgatgagt cggctttttt ttGCCTGTTA TTTATCAGCG
0141 TCTACCCTTT AAGAGTCCAC CCAATGACCA GAGGGAAATA TGACGACACT TATTTATTTG CAAATTCCTG
0211 TCCCTGAACC GA
|
