|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
mcaS
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
mcaS
Search strains by all related name:
mcaS b4426 ECK1336 IS061 isrA JWR0233
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
mcaS
|
|
Alternative name
|
b4426,ECK1336,IS061,isrA,JWR0233
|
|
Location, Length
|
1,403,680 - 1,403,775
(
-
)
;
30.25
min
;
96
(bp) ,
|
|
Product
|
motility and biofilm regulator sRNA
|
|
Operon Name
|
isrA
|
|
Note
|
identified in a large scale screen
|
|
Function
|
represses csgD, activates flhD, regulates pgaA
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gattattcat tcacgatatt aataatgtaa
-070 cttatatttt cgtgaaatct gtcactgaag aaaattggca actaaaggtt aaaaccgtta taacacagtc
0001 accggcgcag aggagacaat gccggattta agacgcggat gcactgctgt gtgtactgta gagtctggcg
0071 gatgtcgaca gactctattt ttttatgcag ttttaacttt gcagatagcc gcattctcgc cggaattgcg
0141 tgattaatga cgcggtcagt ggtgtctggc gactatcacg ccgctgaatc aaataa
|
