|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
15
(LD)
,
DE(pgl-grxA)502
,
15+dps
(LD)
,
OCR48,50-8 (LD 15D::Cm)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rybB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rybB
Search strains by all related name:
rybB b4417 ECK0837 JWR0227 p25
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
rybB
|
|
Alternative name
|
b4417,ECK0837,JWR0227,p25
|
|
Location, Length
|
887,199 - 887,277
(
-
)
;
19.12
min
;
79
(bp) ,
|
|
Product
|
sRNA antisense regulator of ompC and ompW mRNA instability, Hfq-dependent
|
|
Operon Name
|
rybB
|
|
Note
|
identified in a large scale screen
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gtatggccag gattaggata aaactgaagt
-070 tgccctgaaa atgaaatttt tttgcacaac cgcagaactt ttccgcaggg catcagtctt aattagtgcc
0001 actgcttttc tttgatgtcc ccattttgtg gagcccatca accccgccat ttcggttcaa ggttgatggg
0071 ttttttgtta tctaaaactt atctactacc ctgcaaccct ctcaaccatc ctcaaaatct cctcgcgcga
0141 tagcggctta cggtcggtga caaaatgcag cgtcatccc
|
