|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR27
(D)
,
OCR27-8
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sokC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sokC
Search strains by all related name:
sokC b4413 ECK0019 JWR0224 sof
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
sokC
|
|
Alternative name
|
b4413,ECK0019,JWR0224,sof
|
|
Location, Length
|
16,952 - 17,006
(
+
)
;
0.37
min
;
55
(bp) ,
|
|
Product
|
sRNA antisense regulator blocking mokC, and hence hokC, translation
|
|
Operon Name
|
sokC
|
|
Note
|
IS186A interrupts hokC transcript downstream of hokC gene in K-12
|
|
Function
|
component of addiction module
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGGTGATACA GATGACGATC AGGGCGACAA
-070 TCATCGCCTT ATGCTGCTTC ATTGCTCTCT TCTCCTTGAC CTTACGGTCA GTAAGAGGCA CTCTACATGT
0001 gttcagcata taggaggcct cgggttgatg gtaaaatatc actcggggct tttctCTATC TGCCGTTCAG
0071 CTAATGCCTG AGACAGACAG CCTCAAGCAC CCGCCGCTAT TATATCGCTC TCTTTAACCC ATTTTGTTTT
0141 ATCGATTCTA ATCCT
|
