|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
J Basic Microbiol. 1995;35(4):217-27.
The fix Escherichia coli region contains four genes related to carnitine metabolism.
Eichler K, Buchet A, Bourgis F, Kleber HP, Mandrand-Berthelot MA.
(
7473063
)
|
|
|
Deletion
|
OCR28
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
fixX
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
fixX
Search strains by all related name:
fixX b0044 ECK0045 JW0043 yaaT
|
General information (Go to Linear View: )
|
|
Gene Name
|
fixX
|
|
Alternative name
|
b0044,ECK0045,JW0043,yaaT
|
|
Location, Length
|
45,463 - 45,750
(
+
)
;
0.98
min
;
288
(bp) ,
95
(aa)
|
|
Product
|
putative 4Fe-4S ferredoxin-type protein
|
|
Operon Name
|
fixABCX
|
|
Note
|
putative ferredoxin; GO_process: GO:0042413 - carnitine catabolic process
|
|
Function
|
putative carrier; Not classified
|
|
Gene Ontology
|
GO:0005506
;
iron ion binding ( fixX )
GO:0006118
;
electron transport ( fixX )
GO:0006810
;
transport ( fixX )
GO:0046872
;
metal ion binding ( fixX )
GO:0051536
;
iron-sulfur cluster binding ( fixX )
GO:0051539
;
4 iron, 4 sulfur cluster binding ( fixX )
|
|
PID
|
1786228
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
FIXX_ECOLI
(
P31576
;
P75627
)
|
|
- Protein name
|
Ferredoxin-like protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=fixX; OrderedLocusNames=b0044, c0054, z0050, ECs0047;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
fixX
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain B, Formate Dehydrogenase N From E. Coli
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Ferredoxin-like protein fixX
|
|
PSI-BLAST
|
Ferredoxin-like protein
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative ferredoxin [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Basic Microbiol. 1995;35(4):217-27.
The fix Escherichia coli region contains four genes related to carnitine metabolism.
Eichler K, Buchet A, Bourgis F, Kleber HP, Mandrand-Berthelot MA.
(
7473063
)
|
J Bacteriol. 1998;180:2599-2608
Regulation of the carnitine pathway in Escherichia coli: investigation of the cai-fix divergent promoter region.
Buchet, A., K. Eichler, and M. A. Mandrand-Berthelot.
|
| Sequences |
Amino acid
FASTA format
|
0001 MTSPVNVDVK LGVNKFNVDE EHPHIVVKAD ADKQALELLV KACPAGLYKK QDDGSVRFDY AGCLECGTCR
0071 ILGLGSALEQ WEYPRGTFGV EFRYG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCAGCGCGCC GGAACTGATG CGCAAGAAAA
-070 TCCTCCGCCA CGGCAAGAAA GTGGGCTTCA TCAATCTAAT CAAGGATGGC ATGAAAGGAG TGACCGTTTT
0001 atgacttctc ccgtcaatgt ggacgtcaaa ctgggcgtca ataaattcaa tgtcgatgaa gagcatccgc
0071 acattgttgt gaaggccgat gctgataaac aggcgctgga gctgctggtg aaagcgtgcc ccgcaggtct
0141 gtacaagaag caggatgacg gcagtgtgcg cttcgattac gccggatgtc tggagtgcgg cacctgtcgc
0211 attctggggc tggggtcggc gctggaacag tgggaatacc cgcgcggcac ctttggtgtg gagttccgtt
0281 acggctgaTG TTGGTTTGAT ACGTAACGCC GCACTGACTC TCATTGCAAA AAACAGGAAT AACCATGCAA
0351 CCGTCCAGAA ACTTTGACGA TCTCAAATTC TCCTCTAT
|
