|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
9-1
(LD)
,
DE(gpt-lac)5
,
DE(argF-lac)169
,
OCR36,37-6 (LD 9C::Ap)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ecpD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ecpD
Search strains by all related name:
ecpD b0290 ECK0289 f547 f547a JW0284 matE yagW
|
General information (Go to Linear View: )
|
|
Gene Name
|
ecpD
|
|
Alternative name
|
b0290,ECK0289,f547,f547a,JW0284,matE,yagW
|
|
Location, Length
|
304,398 - 306,041
(
-
)
;
6.56
min
;
1644
(bp) ,
547
(aa)
|
|
Product
|
putative receptor
|
|
Operon Name
|
matC-yagXWV
|
|
Note
|
|
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Function
|
putative factor; Not classified
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ecpD )
GO:0006950
;
response to stress ( ecpD )
GO:0007047
;
cell wall organization and biogenesis ( ecpD )
GO:0009289
;
fimbrium ( ecpD )
GO:0030288
;
outer membrane-bounded periplasmic space ( ecpD )
GO:0042597
;
periplasmic space ( ecpD )
GO:0042995
;
cell projection ( ecpD )
|
|
PID
|
1786483
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YAGW_ECOLI
(
P77694
)
|
|
- Protein name
|
Hypothetical protein yagW.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yagW; OrderedLocusNames=b0290;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ecpD
(
homologous genes of other bacterias
)
yagW
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Complement Receptor Type 2
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yagW
|
|
PSI-BLAST
|
Hypothetical protein yagW
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted receptor [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MRVNLLITMI IFALIWPVTA LRAAVSKTTW ADAPAREFVF VENNSDDNFF VTPGGALDPR LTGANRWTGL
0071 KYTGSGTIYQ QSLGYIDNGY NTGLYTNWKF DMWLENSPVS SPLTGLRCIN WYAGCNMTTS LILPQTTDAS
0141 GFYGATVTSG GAKWMHGMLS DAFYQYMQQM PVGSSFTMTI NACQTSVNYD ASSGARCKDQ ASGNWYVRNV
0211 THTKAANLRL INTHSLAEVF INSDGVPTLG EGNADCRTQT IGSRSGLSCK MVNYTLQTNG LSNTSIHIFP
0281 AIANSSLASA VGAYDMQFSL NGSSWKPVSN TAYYYTFNEM KSADSIYVFF SSNFFKQMVN LGISDINTKD
0351 LFNFRFQNTT SPESGWYEFS TSNTLIIKPR DFSISIISDE YTQTPSREGY VGSGESALDF GYIVTTSGKT
0421 AADEVLIKVT GPAQVIGGRS YCVFSSDDGK AKVPFPATLS FITRNGATKT YDAGCDDSWR DMTDALWLTT
0491 PWTDISGEVG QMDKTTVKFS IPMDNAISLR TVDDNGWFGE VSASGEIHVQ ATWRNIN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gctctggaac tcaaccaggc gcgcggtgcc
-070 gtctgggtcg gtgatgtggt ctgcagcggc ctctcatcgt gggcggcggt gacgcagaca ggagaagaga
0001 atgagagtta acctactaat aacgatgata attttcgcgc taatctggcc agtaactgcg ctcagagcgg
0071 cagtgagcaa aacaacctgg gcggatgcac cggcacgcga gtttgtgttt gtcgaaaaca actcagacga
0141 caactttttc gtcactcctg gcggggcgct ggatccgcgc ctgaccggtg ccaaccgctg gaccggttta
0211 aaatacactg gttcaggaac catctatcag caaagcctcg gctacattga taacggttac aacaccggcc
0281 tttataccaa ctggaagttt gatatgtggc tggaaaattc accagtttca tctcctttaa ctggcttgcg
0351 ctgcatcaac tggtacgctg ggtgtaatat gaccaccagt cttatcctgc cgcaaaccac cgacgccagt
0421 ggattttatg gcgcgacggt gaccagcggc ggcgcgaagt ggatgcacgg catgttgtca gacgcgtttt
0491 accagtatat gcaacaaatg cccgtcggca gcagctttac aatgaccatc aatgcctgcc agacctctgt
0561 gaactatgac gccagcagcg gcgcacgctg taaggatcag gcctccggca actggtatgt tcgcaacgtc
0631 acccatacga aagcagcaaa tctacggttg ataaataccc actcgctggc ggaagtattt atcaacagcg
0701 acggagtacc gactctgggc gaagggaacg ccgactgccg gacgcaaacc atcggcagcc gttcaggatt
0771 aagttgtaag atggttaact ataccctgca aacaaacgga ctcagcaaca cctcaatcca tatattcccg
0841 gcgatcgcca actcgtcgtt agcctcggcc gtcggggcgt acgatatgca gttcagtctg aatggcagtt
0911 catggaaacc ggtgagcaat accgcctatt actacacctt caacgagatg aagagcgcag actcgatcta
0981 tgttttcttc tcgagcaact tctttaagca gatggtgaac ctcgggatca gcgatatcaa caccaaagat
1051 ctattcaact ttcgctttca gaacaccaca tcaccggagt ctggctggta tgaattttct acctccaaca
1121 cgctgattat caaaccccgt gatttcagca tcagtattat ctccgatgaa tatactcaga caccgtcgcg
1191 ggagggatat gttggcagcg gcgagtcggc actcgatttc ggctatatcg taaccaccag cggtaaaaca
1261 gctgccgacg aagtgctgat caaggtgacc ggacccgcgc aggtgattgg cgggcgctcc tattgtgtct
1331 tcagctccga tgacggtaag gcgaaagtac cgttcccggc gacactttcc tttattaccc gcaacggagc
1401 tacaaaaacc tacgatgccg ggtgcgatga tagctggcgg gatatgaccg atgcgctgtg gttgaccaca
1471 ccgtggactg atatctctgg cgaagtgggg cagatggata agaccacagt caaattttcg attccaatgg
1541 ataacgccat ttcgctgcgt acggtagatg ataacggctg gtttggcgaa gtcagcgctt caggagagat
1611 tcatgttcag gcgacgtggc gtaacattaa ctaaggccct gctgacagcg gtctgtatgc tggcggcacc
1681 tttgacacag gcgatttcgg tcggcaatct gacattttcg ctgccgtccg agactgactt tgtc
|
