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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
|
OCL40
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
scpC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
scpC
Search strains by all related name:
scpC b2920 ECK2916 JW2887 o492 ygfH
|
General information (Go to Linear View: )
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|
Gene Name
|
scpC
|
|
Alternative name
|
b2920,ECK2916,JW2887,o492,ygfH
|
|
Location, Length
|
3,062,824 - 3,064,302
(
+
)
;
66.01
min
;
1479
(bp) ,
492
(aa)
|
|
Product
|
propionyl-CoA:succinate CoA transferase
|
|
Operon Name
|
scpA-argK-scpBC
|
|
Note
|
putative coenzyme A transferase
|
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Function
|
enzyme; Not classified
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( ygfH )
GO:0006084
;
acetyl-CoA metabolic process ( ygfH )
GO:0016740
;
transferase activity ( ygfH )
|
|
PID
|
1789287
|
EC number
(KEGG Pathway)
|
2.8.3.-
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YGFH_ECOLI
(
P52043
)
|
|
- Protein name
|
Hypothetical protein ygfH.
|
|
- Synonyms
|
|
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- Gene name
|
Name=ygfH; OrderedLocusNames=b2920;
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Homology Analysis
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|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygfH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Coenzyme A Transferase From Pseudomonas Aeruginosa
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygfH
|
|
PSI-BLAST
|
Acetyl-CoA hydrolase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
propionyl-CoA:succinate-CoA transferase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 METQWTRMTA NEAAEIIQHN DMVAFSGFTP AGSPKALPTA IARRANEQHE AKKPYQIRLL TGASISAAAD
0071 DVLSDADAVS WRAPYQTSSG LRKKINQGAV SFVDLHLSEV AQMVNYGFFG DIDVAVIEAS ALAPDGRVWL
0141 TSGIGNAPTW LLRAKKVIIE LNHYHDPRVA ELADIVIPGA PPRRNSVSIF HAMDRVGTRY VQIDPKKIVA
0211 VVETNLPDAG NMLDKQNPMC QQIADNVVTF LLQEMAHGRI PPEFLPLQSG VGNINNAVMA RLGENPVIPP
0281 FMMYSEVLQE SVVHLLETGK ISGASASSLT ISADSLRKIY DNMDYFASRI VLRPQEISNN PEIIRRLGVI
0351 ALNVGLEFDI YGHANSTHVA GVDLMNGIGG SGDFERNAYL SIFMAPSIAK EGKISTVVPM CSHVDHSEHS
0421 VKVIITEQGI ADLRGLSPLQ RARTIIDNCA HPMYRDYLHR YLENAPGGHI HHDLSHVFDL HRNLIATGSM
0491 LG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGTATGACAG CGAAGATTAC CAGGAAGGGA
-070 TGAACGCTTT CCTCGAAAAA CGTAAACCTA ATTTCGTTGG TCATTAATCC CTGCGAACGA AGGAGTAAAA
0001 atggaaactc agtggacaag gatgaccgcc aatgaagcgg cagaaattat ccagcataac gacatggtgg
0071 catttagcgg ctttaccccg gcgggttcgc cgaaagccct acccaccgcg attgcccgca gagctaacga
0141 acagcatgag gccaaaaagc cgtatcaaat tcgccttctg acgggtgcgt caatcagcgc cgccgctgac
0211 gatgtacttt ctgacgccga tgctgtttcc tggcgtgcgc catatcaaac atcgtccggt ttacgtaaaa
0281 agatcaatca gggcgcggtg agtttcgttg acctgcattt gagcgaagtg gcgcaaatgg tcaattacgg
0351 tttcttcggc gacattgatg ttgccgtcat tgaagcatcg gcactggcac cggatggtcg agtctggtta
0421 accagcggga tcggtaatgc gccgacctgg ctgctgcggg cgaagaaagt gatcattgaa ctcaatcact
0491 atcacgatcc gcgcgttgca gaactggcgg atattgtgat tcctggcgcg ccaccgcggc gcaatagcgt
0561 gtcgatcttc catgcaatgg atcgcgtcgg tacccgctat gtgcaaatcg atccgaaaaa gattgtcgcc
0631 gtcgtggaaa ccaacttgcc cgacgccggt aatatgctgg ataagcaaaa tcccatgtgc cagcagattg
0701 ccgataacgt ggtcacgttc ttattgcagg aaatggcgca tgggcgtatt ccgccggaat ttctgccgct
0771 gcaaagtggc gtgggcaata tcaataatgc ggtaatggcg cgtctggggg aaaacccggt aattcctccg
0841 tttatgatgt attcggaagt gctacaggaa tcggtggtgc atttactgga aaccggcaaa atcagcgggg
0911 ccagcgcctc cagcctgaca atctcggccg attccctgcg caagatttac gacaatatgg attactttgc
0981 cagccgcatt gtgttgcgtc cgcaggagat ttccaataac ccggaaatca tccgtcgtct gggcgtcatc
1051 gctctgaacg tcggcctgga gtttgatatt tacgggcatg ccaactcaac acacgtagcc ggggtcgatc
1121 tgatgaacgg catcggcggc agcggtgatt ttgaacgcaa cgcgtatctg tcgatcttta tggccccgtc
1191 gattgctaaa gaaggcaaga tctcaaccgt cgtgccaatg tgcagccatg ttgatcacag cgaacacagc
1261 gtcaaagtga tcatcaccga acaagggatc gccgatctgc gcggtctttc cccgcttcaa cgcgcccgca
1331 ctatcattga taattgtgca catcctatgt atcgggatta tctgcatcgc tatctggaaa atgcgcctgg
1401 cggacatatt caccacgatc ttagccacgt cttcgactta caccgtaatt taattgcaac cggctcgatg
1471 ctgggttaaT GACTCGTCCC GTCACGATCT TCAGCAATAT GCTGAAGCAT CGTGGCGGTA TAACGATGAT
1541 TTCTGATTGA ATAAAGATAT TCCTGCATAT ACATCGGCC
|
