|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL46
(D)
,
OCL46-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
casD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
casD
Search strains by all related name:
casD b2757 cas5 ECK2752 f226 JW5844 ygcI
|
General information (Go to Linear View: )
|
|
Gene Name
|
casD
|
|
Alternative name
|
b2757,cas5,ECK2752,f226,JW5844,ygcI
|
|
Location, Length
|
2,878,396 - 2,879,070
(
-
)
;
62.04
min
;
675
(bp) ,
224
(aa)
|
|
Product
|
CRISP RNA (crRNA) containing Cascade antiviral complex protein
|
|
Operon Name
|
casABCDE12
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
87082154
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YGCI_ECOLI
(
Q46898
)
|
|
- Protein name
|
Hypothetical protein ygcI precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygcI; OrderedLocusNames=b2757;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcI
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygcI precursor
|
|
PSI-BLAST
|
Hypothetical protein ygcI precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2757 - Escherichia coli (strain K-12)
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MRSYLILRLA GPMQAWGQPT FEGTRPTGRF PTRSGLLGLL GACLGIQRDD TSSLQALSES VQFAVRCDEL
0071 ILDDRRVSVT GLRDYHTVLG AREDYRGLKS HETIQTWREY LCDASFTVAL WLTPHATMVI SELEKAVLKP
0141 RYTPYLGRRS CPLTHPLFLG TCQASDPQKA LLNYEPVGGD IYSEESVTGH HLKFTARDEP MITLPRQFAS
0211 REWYVIKGGM DVSQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tcagcttatc tgatgtagac ccaattactg
-070 ctcaagttaa acaaatgcct actttagaac agttaaaatc ctgggttcgt aataatggcg aggcgtgaac
0001 atgagatctt atttgatctt gcggcttgct gggccaatgc aagcctgggg gcagccgacc tttgaaggaa
0071 cgcgacctac cggaagattt ccgacccgaa gcgggttatt agggctactc ggggcttgtc ttgggatcca
0141 acgtgatgat acttcttcat tacaggcgtt atcagagagt gtgcaatttg cagtgcgctg cgatgaactc
0211 attcttgacg atcgtcgtgt gtctgtaacg gggttgcgtg attaccatac agtccttgga gcgcgagaag
0281 attaccgtgg tttgaaaagt catgaaacga ttcaaacatg gcgcgaatat ttatgtgatg cctcctttac
0351 cgtcgctctc tggttaacac cccatgcaac gatggttatc tcagaacttg aaaaagcagt attaaagcct
0421 cggtatacac cttacctggg gcggagaagt tgcccactaa cacacccgct ttttttgggg acatgtcagg
0491 catcggatcc tcagaaggcg ctattaaatt atgagcccgt tggcggcgat atatatagtg aggaatcagt
0561 tacagggcat catttaaaat ttacggcgcg cgacgaaccg atgatcacct tgcctcgaca atttgcttcc
0631 cgagaatggt atgtgattaa aggaggtatg gatgtatctc agtaaagtca tcattgccag ggcctggagc
0701 agggatcttt accaacttca ccagggatta tggcatttat ttccaaacag accggatgct gctcgtgatt
0771 ttctt
|
