|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(lpcA-proB)70
,
OCR36,37-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafO
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafO
Search strains by all related name:
yafO b0233 ECK0234 JW0223
|
General information (Go to Linear View: )
|
|
Gene Name
|
yafO
|
|
Alternative name
|
b0233,ECK0234,JW0223
|
|
Location, Length
|
252,301 - 252,699
(
+
)
;
5.44
min
;
399
(bp) ,
132
(aa)
|
|
Product
|
mRNA interferase toxin of the YafO-YafN toxin-antitoxin system
|
|
Operon Name
|
dinB-yafNOP
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1786427
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YAFO_ECOLI
(
Q47157
)
|
|
- Protein name
|
Hypothetical protein yafO.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yafO; OrderedLocusNames=b0233;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yafO
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yafO
|
|
PSI-BLAST
|
Hypothetical protein yafO
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted toxin of the YafO-YafN toxin-antitoxin system [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MRVFKTKLIR LQLTAEELDA LTADFISYKR DGVLPDIFGR DALYDDSFTW PLIKFERVAH IHLANENNPF
0071 PPQLRQFSRT NDEAHLVYCQ GAFDEQAWLL IAILKPEPHK LARDNNQMHK IGKMAEAFRM RF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCCGTCCAAG TGCTGCAAGA TTAGAGGAAA
-070 TTACACGCCG CGCTGAACAA TATCTTAATG ATATGACGGA TGATGATTTC AATGACTTTA AGGAATAAGG
0001 atgcgggtat tcaaaacaaa acttattcgc ctgcaactta cagcagagga acttgatgcg ttaacggcgg
0071 attttatttc ctataagcgt gacggtgttt tgccagatat atttggtcgc gatgcactct acgacgactc
0141 ctttacctgg ccattaatca aatttgagcg agttgctcat attcatctgg caaatgagaa taatccattt
0211 ccgccacagt tgcgccaatt cagcagaacg aatgacgaag cgcatttggt atattgtcag ggggcgtttg
0281 atgagcaagc atggttgctc attgccattc tgaaacctga acctcataaa ctggctcgag ataacaacca
0351 aatgcataaa attgggaaaa tggcagaagc gtttcgcatg cgtttttgaA TTTATATTAT GAATAACATA
0421 CAAATAAGAA ACTATCAGCC TGGCGATTTT CAGCAACTAT GCGCTATTTT CATTAGAGCG GTTACGATGA
0491 CCGCCAGTC
|
