|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR67
(D)
,
OCR67-2
(D)
,
OCR67-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
chaC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
chaC
Search strains by all related name:
chaC b1218 ECK1212 JW1209
|
General information (Go to Linear View: )
|
|
Gene Name
|
chaC
|
|
Alternative name
|
b1218,ECK1212,JW1209
|
|
Location, Length
|
1,271,730 - 1,272,425
(
+
)
;
27.41
min
;
696
(bp) ,
231
(aa)
|
|
Product
|
cation transport regulator
|
|
Operon Name
|
chaBC
|
|
Note
|
GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006350 - transcription
|
|
Function
|
transport; Transport of small molecules: Cations
|
|
Gene Ontology
|
GO:0006810
;
transport ( chaC )
|
|
PID
|
145693119
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
CHAC_ECOLI
(
P39163
;
P77176
)
|
|
- Protein name
|
Cation transport protein chaC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=chaC; OrderedLocusNames=b1218;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
chaC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Cation transport protein chaC
|
|
PSI-BLAST
|
Cation transport protein chaC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
regulatory protein for cation transport [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
Personal communication.
Wu, H. C., and K. Rudd.
|
| Sequences |
Amino acid
FASTA format
|
0001 MITRDFLMNA DCKTAFGAIE ESLLWSAEQR AASLAATLAC RPDEGPVWIF GYGSLMWNPA LEFTESCTGT
0071 LVGWHRAFCL RLTAGRGTAH QPGRMLALKE GGRTTGVAYR LPEETLEQEL TLLWKREMIT GCYLPTWCQL
0141 DLDDGRTVNA IVFIMDPRHP EYESDTRAQV IAPLIAAASG PLGTNAQYLF SLEQELIKLG MQDDGLNDLL
0211 VSVKKLLAEN FPDGVLRPGF A
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTGCATATTG TCCCGTTAGT GGTTTCAAAA
-070 TGAGCAGTAA AAATGTCCGG AAGACACCAA AAAGTTGTCG CAGGGAAGTA TGCAGTGGCG GAAGTGTAAG
0001 gtgataacgc gtgatttctt gatgaatgcc gattgtaaaa cggcatttgg tgccattgaa gaatcactct
0071 tatggtcagc agaacaacgg gcggcttcgc tggcggcgac gctggcttgt cgacctgatg agggaccggt
0141 gtggatcttc ggctatggat cgttgatgtg gaatccggca ctggagttta ccgaatcgtg caccggtaca
0211 ctggttggat ggcatcgcgc attttgcctg cgcctgaccg ccgggcgcgg gactgcgcac cagccgggac
0281 ggatgcttgc actgaaagag ggcggacgca ccacaggcgt cgcctatcga ctgccagaag agacgctgga
0351 gcaggaacta accctgttgt ggaagcgaga gatgattacc ggctgttatc tgccaacctg gtgtcagctt
0421 gatcttgatg atggacgcac agtaaacgcc attgtgttta ttatggaccc gcgacatcca gaatatgaat
0491 ctgatactcg cgctcaggtc atcgcgccgt tgattgcggc ggcgagcggt ccgctgggaa ccaacgcaca
0561 atacctgttt tcactggaac aggagcttat caaactggga atgcaggacg atgggctgaa tgatttgctg
0631 gtatcggtaa aaaaactgct ggcggagaat tttccggatg gtgtgttacg tccgggattc gcctgaGTAA
0701 ACTTCCCGCA TAGTGGGGCG TCAGACGCCC CCTCAAACAT TAAAATGTGA GCACTTTATC GGCTGACAGC
0771 GTCCATTGCG CCAGTTCCAC AAGAGT
|
