|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafU
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafU
Search strains by all related name:
yafU b0218 ECK0218 f112 f113a JW0207
|
General information (Go to Linear View: )
|
|
Gene Name
|
yafU
|
|
Alternative name
|
b0218,ECK0218,f112,f113a,JW0207
|
|
Location, Length
|
238,746 - 239,102
(
-
)
;
5.15
min
;
357
(bp) ,
118
(aa)
|
|
Product
|
|
|
Operon Name
|
yafU
|
|
Note
|
pseudogene
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( yafU )
GO:0016020
;
membrane ( yafU )
GO:0016021
;
integral to membrane ( yafU )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YAFU_ECOLI
(
P77354
)
|
|
- Protein name
|
Hypothetical protein yafU.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yafU; OrderedLocusNames=b0218;
|
|
- Comments
|
SUBCELLULAR LOCATION:Integral membrane protein (Potential).
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yafU
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Inner membrane protein yafU
|
|
PSI-BLAST
|
Inner membrane protein yafU
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted inner membrane protein [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgtcttcatt cattaccacg tccagacgcc
-070 tgtgcagctt attctccacg tgccagtggt ttcggattgc tgtggcgaac ttctctgcgg ttaaatcagc
0001 agaaccatag aatttattat gagttcagag cgagatctgg ttaattttct tggcgatttt tcaatggatg
0071 tggccaaagc agttatagcc ggtggtgttg caaccgctat tggaagtctg gcttcttttg cctgtgttag
0141 ctttggcttt ccagtaattc ttgtcggagg agcaatttta ctgacaggga tagtgtgtac agttgtttta
0211 aatgaaatcg atgctcaatg ccatttatca gaaaaattaa aatatgcaat tagagatgga ctaaaacggc
0281 aacaggaact tgataaatgg aaaagggaaa acatgactcc atttatgtat gttcttaaca ctccacccgt
0351 gatatgagga ttaaccatgc gtttacatgt taaattaaaa gagtttcttt cgatgttttt tatggccata
0421 ttatttttcc ctgcattcaa tgcttctttg tttttta
|
