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BLAST
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Please select the Program and Database.
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query [translated into protein] vs. DNA database [translated into protein])
tblastn (Protein query vs. DNA database [translated into protein])
Database :
Xenopus NBRP cDNA clone sequences (327,994 sequences)
Xenopus NBRP cDNA clone 5'end sequences (169,340 sequences)
Xenopus NBRP cDNA clone 3'end sequences (158,654 sequences)
Xenopus laevis NBRP cDNA clone sequences (268,101)
Xenopus laevis anterior endomesoderm NBRP cDNA clone sequences (66,334 sequences)
Xenopus laevis anterior neuroectoderm NBRP cDNA clone sequences (69,915 sequences)
Xenopus laevis keller explants NBRP cDNA clone sequences (69,183 sequences)
Xenopus laevis whole embryo 25 NBRP cDNA clone sequences (35,548 sequences)
Xenopus laevis whole embryo 15 NBRP cDNA clone sequences (28,720 sequences)
Xenopus laevis whole embryo 10.5 NBRP cDNA clone sequences (40,476 sequences)
Xenopus tropicalis embryo NBRP cDNA clone sequences (59,893 sequences)
Please specify the sequence data required.
File Upload :
or COPY & PASTE :
The following options will be set up if necessary.
Options for BLAST Search
Filter
ON
OFF
Query
Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Expect
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Other options:
Options for
BLASTScope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits
Limit :
Hits
Number of HSPs :
All HSPs
Limit :
HSPs
Limit results by alignment length :
>
Limit results by range of
query sequence :
-
Image width :