National BioResource Project (NBRP)::KOMUGI -Integrated Wheat Science Database- : Genome / Development

Gene symbol	Class				Synonyms	Chromosomes	Germplasms
Gene symbol	Level1	Level2	Level3	Level4	Synonyms	Chromosomes	Germplasms
Pinb-D1j	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii TA1599 (GenBank AY251962) Pina-D1a, Gsp-D1g,dv:TA1691 (GenBank AY251964) Pina-D1a, Gsp-D1h,dv:Ae. tauschii TA1691 (GenBank AY251946)
Pinb-D1j	Comment:
Pinb-D1ab	Proteins	Other proteins	Puroindolines and grain softness protein				v:KU3062,v:KU3069,v:Tuokexunyihao
Pinb-D1ab	Comment:
Pinb-D1b	Proteins	Other proteins	Puroindolines and grain softness protein			5DS	i:Paha^2/Early Blackhull/5^Paha,i:Early Blackhull der./5^Nugaines sel.,i:hard sib sel. from Weston,i:PI 644081 (Alpowa/ND2603//7Alpowa),s:CS^7/Cheyenne 5D,v:Thatcher,v:Wanser,v:hard component of Turkey,v:Cheyenne (GenBank DQ363914),v:Renan (GenBank CR626934),v2:Bastion Pina-D1a,v2:Bezostaya Pina-D1a,v2:Brasilia Pina-D1a,v2:Cerere Pina-D1a,v2:Colfiorito Pina-D1a,v2:Cologna 21 Pina-D1a,v2:David Pina-D1a,v2:Democrat Pina-D1a,v2:Etruria Pina-D1a,v2:Francia Pina-D1a,v2:Gemini Pina-D1a,v2:Genio Pina-D1a,v2:Gladio Pina-D1a,v2:Marberg Pina-D1a,v2:Mieti Pina-D1a,v2:Newana Pina-D1a,v2:Pandas Pina-D1a,v2:Pascal Pina-D1a,v2:Sagittario Pina-D1a,v2:Salgemma Pina-D1a,v2:Saliente Pina-D1a,v2:Salmone Pina-D1a,v2:Serio Pina-D1a,v2:Veda Pina-D1a,v2:Zena Pina-D1a*
Pinb-D1b	Comment: Pinb-D1b is a "loss-of-function" mutation resulting from the replacement of a glycine by a serine at position 46 {452}.
Pinb-D1g	Proteins	Other proteins	Puroindolines and grain softness protein				i:PI 644086 (Alpowa/Andrews//7*Alpowa),v:Andrews
Pinb-D1g	Comment: Pinb-D1g is a "loss-of-function" mutation resulting from the replacement of a cysteine by a stop codon at position 56 {0204}.
Pinb-A^m1	Proteins	Other proteins	Puroindolines and grain softness protein			5A^mS	dv:T. monococcum DV92 (cultivated) cds (GenBank AJ242716) complete BAC sequence (GenBank AY491681), G3116 (spp. aegilopoides ),dv:is identical to allele Pina-D1h,dv:PI277138 (GenBank AJ302102),dv:PI418582 (GenBank AJ302101),dv:T. monococcum TA2025 (GenBank AY622797),dv:T. monococcum TA2026 (GenBank AY622798),dv:T. monococcum TA183 (GenBank AY622799)
Pinb-A^m1	Comment: In T. monococcum Pinb-A^m1 is 0.1 cM proximal to Pina-A^m1 and both loci are less than 36 kb apart {0083}.
Pinb-D1x	Proteins	Other proteins	Puroindolines and grain softness protein				v:Kashibaipi (GenBank AM909618)
Pinb-D1x	Comment:
Pinb-D1h	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii TA2369 (GenBank AY251983) Pina-D1c, Gsp-D1c,dv:TA2527 (GenBank AY251965) Pina-D1c, Gsp-D1e,dv:TA1649 (GenBank AY251963) Pina-D1d, Gsp-D1f,dv:TA10 (GenBank AY649748),dv:CPI110799 (GenBank AY159804)
Pinb-D1h	Comment:
Pinb-D1w	Proteins	Other proteins	Puroindolines and grain softness protein		Pinb-D1q		v:Jing 771 (GenBank AY640304, AB180737),v:homonym 'b4',dv:Ae. tauschii 002 (GenBank DQ257553),dv:Ae. tauschii ssp. tauschii TA1704 (GenBank AY649747),dv:Ae. tauschii ssp. anathera TA2381 (GenBank AY649747
Pinb-D1w	Comment: This variety/sequence was incorrectly assigned Pinb-D1x in the 2006 supplement; the original assignment of {10316} is now unchanged. Ae. tauschii isolate Q03-002 (GenBank DQ257553) (referred to as allele 2) {10314}; Ae. tauschii TA1704 and TA2381 (GenBank AY649747) {10315}; Ae. tauschii CPI 110799 (GenBank CR626926) {10440} were incorrectly assigned this allele in the 2006 supplement; they are Pinb-D1i as listed above.
Pina-S^l1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. longissima spp. longissima TA1912 (GenBank AY622790),dv:Ae. longissima spp. nova TA1921 (GenBank AY622791)
Pina-S^l1	Comment:
Pina-D1k	Proteins	Other proteins	Puroindolines and grain softness protein		homonym:Pina-D1b/Pinb-D1h(t)		s:CS/Red Egyptian 5D substitution line, Pinb-D1q, Gsp-D1i*,v:Bindokku,v:Cheyenne-A,v:Chosen 68,v:Gaiyuerui,v:KT020-584,v:Saiiku 18,v:Saiiku 44,v:Safangmai,v:Tachun2,v:ZM2851,v:ZM2855
Pina-D1k	Comment: This allele is currently used to denote a large deletion of undetermined size that involves Pina-D1, Pinb-D1 and Gsp-D1 {10077}. The deletion of both puroindolines is associated with harder kernel texture than other known puroindoline hardness alleles {10077,10305, 10432).
Pinb-D1q	Proteins	Other proteins	Puroindolines and grain softness protein				s:CS/Red Egyptian 5D substitution line, Pina-D1k, Gsp-D1i*,v:Jingdong 11 (GenBank EF620909)
Pinb-D1q	Comment: This allele was used originally (2004 supplement) in combination with Pina-D1k and Gsp-D1i to denote the large deletion that encompasses Pina-D1, Pinb-D1, and Gsp-D1 {10077} (cf. Pins-D1k). The haplotype nomenclature of this deletion is under review. Pinb-D1q is currently used to denote the C-to-G SNP at position 218 {10313}.
Pina-S^b1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. bicornis spp. typica TA1954, TA1942
Pina-S^b1	Comment:
Pina-D1m	Proteins	Other proteins	Puroindolines and grain softness protein				v:Hongheshang (GenBank EF620907)
Pina-D1m	Comment: C-to-T substitution: Proline-35 to serine; hard kernel texture {10208}.
Pinb-D1s	Proteins	Other proteins	Puroindolines and grain softness protein				v:NI5439 (NCBI AJ619021)
Pinb-D1s	Comment: G insertion as in Pinb-D1r and an A-to-G substitution; hard kernel texture {10209}.
Pinb-D1f	Proteins	Other proteins	Puroindolines and grain softness protein				i:PI 644085 (Alpowa/Sevier//7*Alpowa),v:Abyssinia AV12.4,v:The hard component of Utac
Pinb-D1f	Comment: Pinb-D1f is a "loss-of-function" mutation resulting from the replacement of a tryptophan by a stop codon at position 44 {0204}.
Pinb-D1m	Proteins	Other proteins	Puroindolines and grain softness protein				v:X. aegilotriticum CIGM87.2783-1B-0PR-0B (GenBank AY573901) Pina-D1c
Pinb-D1m	Comment:
Pinb-D1t	Proteins	Other proteins	Puroindolines and grain softness protein				v:Guangtouxianmai (GenBank EF620910),v:Hongmai
Pinb-D1t	Comment: G-to-C substitution: Glycine-47 to arginine; hard kernel texture {10208}.
Pina-D1j	Proteins	Other proteins	Puroindolines and grain softness protein				v:X. aegilotriticum CIGM88.1363-0B (GenBank AY573900) Pinb-D1o
Pina-D1j	Comment:
Pina-D1	Proteins	Other proteins	Puroindolines and grain softness protein			5DS	v:CS (GenBank DQ363911),v:Capitole (GenBank X69914)
Pina-D1	Comment: This locus has a large deletion encompassing genes Pina-D1, Pinb-D1 and Gsp-D1. This allelic combination confers a harder kernel texture than Pina-D1a/Pinb-D1b {10077}.
Pinb-D1d	Proteins	Other proteins	Puroindolines and grain softness protein				i:PI 644083 (Alpowa/Mjolner//7*Alpowa),v:Bercy,v:Mjolner,v:Soissons (homonym 'b1')
Pinb-D1d	Comment: Pinb-D1d is a "loss-of-function" mutation resulting from the replacement of a tryptophan by a arginine at position 44 {0082}.
Pina-D1f	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii TA2436 (GenBank AY251998) Pinb-D1i, Gsp-D1d
Pina-D1f	Comment:
Pinb-D1k	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii PI554318 (GenBank AJ302108) Pina-D1d
Pinb-D1k	Comment:
Pinb-A1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:T. urartu TA763 (GenBank AJ302103),dv:TA808 (GenBank AJ302104)
Pinb-A1	Comment:
Pina-D1c	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii TA2369 (GenBank AY252031) Pinb-D1h, Gsp-D1c,dv:TA2527 (GenBank AY252015) Pinb-D1h, Gsp-D1e,dv:Ae. tauschii TA10 (GenBank AY649746)
Pina-D1c	Comment:
Pinb-D1i	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii TA2475 (GenBank AY251989) Pina-D1a, Gsp-D1b,dv:TA2536 (GenBank AY251993) Pina-D1c, Gsp-D1d,dv:TA2374 (GenBank AY251948) Pina-D1d, Gsp-D1d,dv:TA2512 (GenBank AY251992) Pina-D1d, Gsp-D1e,dv:TA2455 (GenBank AY251972) Pina-D1d, Gsp-D1f,dv:TA2458 (GenBank AY251986) Pina-D1e, Gsp-D1d,dv:TA2495 (GenBank AY251991) Pina-D1e, Gsp-D1e,dv:TA2436 (GenBank AY251947) Pina-D1f, Gsp-D1d,dv:Ae. tauschii TA1704 and TA2381 (GenBank AY649747),dv:Ae. tauschii isolate Q03-002 (GenBank DQ257553) (referred to as allele 2),dv:Ae. tauschii CPI 110799 (GenBank CR626926)
Pinb-D1i	Comment: Q03-002, TA1704, and TA2381 were incorrectly assigned Pinb-D1w in the 2006 supplement.
Pinb-S^b1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. bicornis spp. typica TA1954 (GenBank AY622807), TA1942 (GenBank AY622808)
Pinb-S^b1	Comment:
Pinb-D1v	Proteins	Other proteins	Puroindolines and grain softness protein		Pinb-D1i(t),Pinb-D1r		v:Qingdao Landrace 1,v:Qitoubai,v:Shijiazhuang 34,v:Tachun 3 (GenBank AY598029),v:Zigan,v:homonym 'b5'
Pinb-D1v	Comment: The original assignment of this allele in the 2006 supplement was incorrect; the sequence/varieties in {10305] are Pinb-D1p as listed above for that allele. The following variety/sequence was assigned Pinb-D1y in the 2006 supplement; but the original assignment of {10316} is now unchanged.
Pina-D1i	Proteins	Other proteins	Puroindolines and grain softness protein				v:X. aegilotriticum CIGM87.2784-1B-0PR-0B (GenBank AY573899) Pinb-D1k
Pina-D1i	Comment:
Pina-S^s1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. searsii TA1837, TA1355 (GenBank AY622792)
Pina-S^s1	Comment:
Pinb-D1ac	Proteins	Other proteins	Puroindolines and grain softness protein				v:Kashibaipi,v:Red Star
Pinb-D1ac	Comment: G to A substitution at position 257 and C to T substitution at position 382 {10570}.
Pinb-D1l	Proteins	Other proteins	Puroindolines and grain softness protein				v:GaoCheng8901
Pinb-D1l	Comment: {10208} reported Pinb-D1b in Gaocheng 8901.
Pinb-D1u	Proteins	Other proteins	Puroindolines and grain softness protein				v:Tiekemai (GenBank EF620911),v:31 hard Yunnan endemic wheats (T. aestivum ssp. yunnanense King)
Pinb-D1u	Comment: Possesses a G deletion at position 127 leading to a shift in ORF {10427}.
Pinb-D1aa	Proteins	Other proteins	Puroindolines and grain softness protein				v:Changmangtoulongbai (GenBank EF620912),v:Hongtutou 1,v:Hongtutou 2
Pinb-D1aa	Comment:
Pinb-S1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. speltoides PI393494 (GenBank AJ302105),dv:PI 369616 (GenBank AJ302106),dv:Ae. speltoides spp. speltoides TA2368 (GenBank AY622797), TA1789 (GenBank AY622802),dv:Ae. speltoides spp. ligustica TA1777 (GenBank AY622803)
Pinb-S1	Comment:
Pina-D1p	Proteins	Other proteins	Puroindolines and grain softness protein				v:T. aestivum Jing 771 (GenBank AY599893)
Pina-D1p	Comment:
Pinb-D1z	Proteins	Other proteins	Puroindolines and grain softness protein
Pinb-D1z	Comment: This allele/sequence is identical to, and listed under Pinb-D1p. Currently there is no assignment for this allele.
Pinb-D1c	Proteins	Other proteins	Puroindolines and grain softness protein				i:PI 644082 (Alpowa/Red Bobs//7*Alpowa),v:Avle,v:Bjorke,v:Portal,v:Reno,v:Tjalve
Pinb-D1c	Comment: Pinb-D1c is a "loss-of-function" mutation resulting from the replacement of a leucine by a proline at position 60 {0082}.
Pina-D1g	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii TA1583 (GenBank AY252029) Pinb-D1a, Gsp-D1b
Pina-D1g	Comment:
Pina-D1l	Proteins	Other proteins	Puroindolines and grain softness protein		Pina-D1c		v:Baikezaomai Chinese landraces,v:Chengduguangtou,v:Guangtouxiaomai,v:Sanyuehuang,v:Xiaoyuhua,v2:Fortuna (USA) Pinb-D1a,v2:Glenman Pinb-D1a
Pina-D1l	Comment: Pina-D1l has a C deletion leading to an open reading frame shift and premature stop codon; PINA null, hard kernel texture {10208}.
Pina-D1n	Proteins	Other proteins	Puroindolines and grain softness protein				v:Baimangchun,v:Hongheshang (GenBank EF620907),v:Xianmai (GenBank EF620908),v:Yazuixiaomai Chinese landraces,v:Yazuizi,v:Zhuantoubaike
Pina-D1n	Comment: G-to-A substitution: Tryptophan-43 to stop codon; PINA null hard kernel texture {10208}.
Pinb-S^s1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. searsii TA1837 (GenBank AY622805), TA2355 (GenBank AY622806)
Pinb-S^s1	Comment:
Pinb-S^l1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. longissima spp. longissima TA1912 (GenBank AY622800),dv:Ae. longissima spp. nova TA1921 (GenBank AY622804)
Pinb-S^l1	Comment:
Pinb-D1p	Proteins	Other proteins	Puroindolines and grain softness protein		Pinb-D1z		v:Dahuangpi (GenBank AY581889),v:Nongda 3213,v:Nongda 3395,v:Qindao landrace,v:Qitoubai,v:Shijiazhuang 34,v:Zigan
Pinb-D1p	Comment: The single nucleotide A deletion occurs in the AAAA at position 210-213 and is assigned to the last position at 213. Homonym: Pinb-D1i(t) {10305}. This homonym sequence (allele) was incorrectly assigned Pinb-D1z, 'b3', Pinb-D1u
Pinb-D1n	Proteins	Other proteins	Puroindolines and grain softness protein				v:X. aegilotriticum CIGM92.1708 (GenBank AY573902) Pina-D1d
Pinb-D1n	Comment:
Pinb-D1	Proteins	Other proteins	Puroindolines and grain softness protein			5DS	v:CS,v:Capitole (GenBank X69912)
Pinb-D1	Comment:
Pinb-S^sh1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. sharonensis TA1999 (GenBank AY622809)
Pinb-S^sh1	Comment:
Pina-D1o	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. tauschii RM0182 (GenBank AY608595)
Pina-D1o	Comment:
Pina-S^sh1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:Ae. sharonensis TA1999 (GenBank AY622796)
Pina-S^sh1	Comment:
Pina-D1a	Proteins	Other proteins	Puroindolines and grain softness protein				v:Bellevue,v:Capitole (GenBank X69914),v:Courtot,v:Fortuna,v:Galaxie,v:Heron,v:Renan (GenBank CR626934),v:Soissons,v2:Aurelio Pinb-D1a,v2:Bezostaja Pinb-D1b,v2:Bilancia Pinb-D1a,v2:Bolero Pinb-D1a,v2:Brasilia Pinb-D1b,v2:Centauro Pinb-D1a,v2:Cerere Pinb-D1b,v2:CS Pinb-D1a,v2:Colfiorito Pinb-D1b,v2:Cologna 21 Pinb-D1b,v2:David Pinb-D1b,v2:Democrat Pinb-D1b,v2:Etruria Pinb-D1b,v2:Francia Pinb-D1b,v2:Gemini Pinb-D1b,v2:Genio Pinb-D1b,v2:Gladio Pinb-D1b,v2:Lampo Pinb-D1a,v2:Leone Pinb-D1a,v2:Leopardo Pinb-D1a,v2:Libero Pinb-D1a,v2:Livio Pinb-D1a,v2:Marberg Pinb-D1b,v2:Mentana Pinb-D1a,v2:Mieti Pinb-D1b,v2:Mose Pinb-D1a,v2:Neviana Pinb-D1a,v2:Newana Pinb-D1b,v2:Oscar Pinb-D1a,v2:Pandas Pinb-D1b,v2:Pascal Pinb-D1b,v2:Penawawa Pinb-D1a,v2:Sagittario Pinb-D1b,v2:Salgemma Pinb-D1b,v2:Saliente Pinb-D1b,v2:Salmone Pinb-D1b,v2:Serena Pinb-D1a,v2:Serio Pinb-D1b,v2:Veda Pinb-D1b,v2:Zena Pinb-D1b,dv:Ae. tauschii upspecified accession (GenBank AJ249935),dv:TA2475 (GenBank AY252037) Pinb-D1i, Gsp-D1b,dv:TA1599 (GenBank AY252011) Pinb-D1j, Gsp-D1g,dv:TA1691 (GanBank AY252013) Pinb-D1j, Gsp-D1h,dv:Ae. tauschii unidentified accession (GenBank AJ249935),dv:Ae. tauschii CPI 110799 (GenBank CR626926)
Pina-D1a	Comment: Pina-D1a is present in all soft hexaploid wheats and possibly all hard hexaploid wheats that carry a hardness mutation in puroindoline b {452,1035,0082,0204,0295}.
Pina-A1	Proteins	Other proteins	Puroindolines and grain softness protein				dv:T. urartu unspecified accession,dv:TA763(GenBank AJ302094),dv:TA808(GenBank AJ302095)
Pina-A1	Comment: