National BioResource Project (NBRP)::KOMUGI -Integrated Wheat Science Database- : cDNA

• > Contig Detail

cDNA - Contig Detail

Wh_VHS_all.Contig1453

Length

1070 bp

Tissue

Shoot with heat shock treatment

Clones

30 Clones [Download: CSV , FASTA ]

whvh10g10 whvh10p02 whvh2h10 whvh3d18 whvh4a08 whvh6o06 whvh8g05 whvh14i21 whvh15i22 whvh16h21 whvh16l20 whvh16m14 whvh17k02 whvh17n12 whvh17n24 rwhvh10g10 rwhvh10p02 rwhvh2h10 rwhvh3d18 rwhvh4a08 rwhvh6o06 rwhvh8g05 rwhvh9f04 rwhvh14i21 rwhvh15i22 rwhvh16h21 rwhvh16l20 rwhvh16m14 rwhvh17k02 rwhvh17n12

Assemble Result

Assemble Viewer

Homology (BLAST)

Top Hit

Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|122246902|sp|Q10HD0|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|152013384|sp|A2XJ35|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic; AltName: Full=LHCII type I CAB; Short=LHCP; Flags: Precursor >gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa (japonica cultivar-group)] >gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa (japonica cultivar-group)] >gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group] >gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_011145 [Oryza sativa (japonica cultivar-group)]

Score

1252

Evalue

1.06722e-135

Total Hit Count

500

>Wh_VHS_all.Contig1453
ATCCACCAGTTCATCTCACTGAGCTCGCAGGCAGCCCCAGCCACCAGCGA
AATGGCCGCGTCGGCGCTGCACCAGACGACCAGCTTCCTCGGCACCGCCC
CGCGCCGCGATGACCTCGTCCGCAGCGTCGGCGACTTCGGCGGCCGCATC
ACCATGCGCCGGACCGTCAAGAGCGCGCCCCAGAGCATCTGGTACGGCCC
AGACCGTCCCAAGTACCTGGGCCCGTTCTCCGAGCAGACCCCGTCGTACC
TGACCGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCCGGATTGTCT
GCTGACCCCGAGACGTTCGCCAAGAACAGGGAGCTGGAGGTGATCCACTC
GCGGTGGGCGATGCTCGGCGCCCTGGGGTGCGTGTTCCCGGAGATCCTGT
CCAAGAACGGCATCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCCGGCGTC
CAGATCTTCTCCGAGGGCGGCCTCGACTACCTGGGCAACCCCAACCTGGT
GCACGCGCAGAGCATCCTCGCCATCTGGGCGGTGCAGGTGGTGCTCATGG
GCTTCATCGAGGGCTACCGTGTTGGTGGCGGCCCCCTCGGCGAGGGCCTC
GACATCATCTACCCAGGAGGCGCCTTCGACCCGCTTGGCCTCGCCGACGA
CCCCGACACCGCCGCCGAGCTCAAGGTGAAGGAGCTCAAGAACGGCCGCC
TCGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCCATCGTCACCGGG
AAGGGGCCAGTTGAGAACCTCTTCGACCACGTCGCCGACCCGGTCAACAA
CAACGCCTGGGCCTTCGCCACCAACTTCGCCCCCGGAAGCTAAATGTGTT
TAGCCGTCCGTCCGTCCGTCCGTCCATCGGACGAGATATGCATGTGTACT
TGTACGTCGTGGATCAACGTGTAGCTGCACGTACTTTGTGTGTTTATTTG
TACCATGATCGAGCGAGCGAGAGGTCCTCTCGCTAGCTGCGCGCAATGTA
AATTAATTAAGCACAAGGTGTGCACGAGGGAATGGATGGAAGAATCGTGT
GTCATTACTCAAAAAAAAAA