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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig19459  (registered. 2007)
Contig Information
Length 1432 bp
Clones 7 Clones [Download: TSV  ,  FASTA ]
Wh_DPA20 Seed DPA20 3
Wh_EMI Dormant seed with water absorption after breaking 2
Wh_V4816 Shoot grown under cold condition for 16days 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0681400 [Oryza sativa (japonica cultivar-group)] >gi|57164486|gb|AAK00965.2|AC079736_5 putative ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica cultivar-group)] >gi|108710422|gb|ABF98217.1| Ubiquitin-conjugating enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] >gi|113549377|dbj|BAF12820.1| Os03g0681400 [Oryza sativa (japonica cultivar-group)] >gi|215737341|dbj|BAG96270.1| unnamed protein product [Oryza sativa Japonica Group]
Score 747
Evalue 5.84172e-77
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig19459 
TATGCGTCCGTGCATATACATAGCCACCGCATAGCATTCACATACGAGCATGCTTTCTCGAGCCATGTTCGTACATGAACATGGACATACACATATTCTT
AGGAACAAATAAGAAAGATAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAATGGCACTTTATATATGGCCTGTCGTGAGTGAG
CTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGACGCATGTTGTCGAATCCGATGATGCGGAC
ATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGCGTGGCGTCGGTGCATCCGAACATAGGCAGCTTCCACATTGTCCAGTAC
CGGCCATCGTAGTACCCAGGGGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGT
CGACCTGCTTAAGGAGGGCCTCCGTGCTGAGCGGTGGCAAGTAGGACAGGGTCTCGAACTTCTTGATGCCTTTTAATAATAAGATAACACTCGATTACTA
CTTTCATCATATCAAAAGGGATAAGAGTTGGTAAGCACGGGAGTTGATACAGGTGCAGGTTCATCATGTACAAAACCACATACATGGGCATGTCAATTTG
CCGCCAAATAGATGGCTTGAAATACTTGCCTAAATGATCCTTTTCATGAACGACGCACGCCATACTACGGTAGGCAGGATGATGATGTATAAGAGCTGCT
GATGCCGGAAGAAGAAACCAGCTGGAGCCCATCACACTTTGTCATCATGAAACCACCACCTCGTCTCCTTCGGAGACCTCCCGTTGCGGCAGTTCCTGAC
GTAGCGATCGTTATCGGATGGGCGTTCCTTAGCTGGTGAACTTGACAACATGGACAAGATGCTGATGCACACGGAACTGACCGTCATTGCTGGTGACCAC
GAGTCATACAATATATCTAGACAGATGTGCCCATTGCTGTAAATGTGCGGATGCATCGGCGCCGGATGCATAAATATAACCTGTGGAGCCTCCATGGGGT
ACTGCTCCGGGAAGTCAACCTGCAGCCGGTACGTCTCGCCGGCGTAGAGCGTCCCCTCCGCCCCCGACACCTCGATGACCCACCGCTGGAGGTTGTCGGA
GACCTTGTAGGTGAAGCCGCCGGGAGGGCTGGCCTGCCACTCCCCGAGCTCCTTCTGCAGCCGGAGGCACGCGATCTTGCTCAGCACCTTGCGGGAAGGG
GAGGAGGAGGCGGAGCTCGTCATGGCGCGCCGCGCGCGGTCTCGCCGAGGCCGGGGGAGGGGGGAAAGGTGCGGGGAATACGTGGGGTGGGGTGGGTTGG
TGTAGCGGCGGGGTGCGACGCGACGGGGATGC
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