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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig20691  (registered. 2007)
Contig Information
Length 1934 bp
Clones 9 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 2
Wh_EM Dormant seed with water absorption 1
Wh_EMC Dormant seed with cold treatment after water absorption 2
Wh_EMI Dormant seed with water absorption after breaking 1
Wh_SHC Shoot grown with cold treatment 2
Wh_V4816 Shoot grown under cold condition for 16days 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os08g0127700 [Oryza sativa (japonica cultivar-group)] >gi|75136283|sp|Q6ZK48|SLU7_ORYSJ RecName: Full=Pre-mRNA-splicing factor SLU7 >gi|150417959|sp|A2YQU8|SLU7_ORYSI RecName: Full=Pre-mRNA-splicing factor SLU7 >gi|42407714|dbj|BAD08862.1| putative step II splicing factor SLU7 [Oryza sativa Japonica Group] >gi|113622874|dbj|BAF22819.1| Os08g0127700 [Oryza sativa (japonica cultivar-group)] >gi|215708746|dbj|BAG94015.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765271|dbj|BAG86968.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215768211|dbj|BAH00440.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218200420|gb|EEC82847.1| hypothetical protein OsI_27673 [Oryza sativa Indica Group]
Score 1231
Evalue 0
Total Hit Count 178
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig20691 
CCTCGTCGTCTCTCGTTATCTCGCCGCCGTTCGTCGCCGCCGGCGCAGACTAGGAGAGGCAGGCGCCATGGCGACCGCTTCAGTATCGTTCAAGTCTCGT
GAGGACCACCGGAAGCAGCTCGAGCTTGAGGAGGCGCGTAAGGCGGGGCTCGCCCCTGCCGAAGTCGACGAGGATGGAAACGAGATTAACCCTCACATCC
CGCAGTATATGTCCTCGGCCCCATGGTATCTCAACGCCGAGAAGCCGAGTTTGAAGCATCAGCGGAAATGGAAGTCGGATCCGAATTACACAAAAGCGTG
GTACGATAGGGGTGCCAGGCTTTTCCAGGCCAACAAATACAGAAAAGGCGCTTGCGAAAACTGTGGAGCCATGACTCACAATAAGAAGGCATGCATGGAT
CGACCTCGGAATGTTGGAGCTAAATATACCAATATGAATATAGCACCAGATGAGAAAGTCGAGTCGTTTGAGCTTGATTATGATGGCAAGCGTGACCGTT
GGAATGGTTATGACACATCAACCTACACTCGTGTTATCCAAGATTATGAAGCTAGAGAAGAGGCCAGGAAAAAGTTCCTGAAAGAACAACAGCTCAAGAA
GCTCGAGGAGAAGGATGGTGAGCAGGATGGTGAGAATGTGGGCAGTGAAGAGGATGAAGAAGATGGCCTGAAGATAGATGAGGCTAAAGTTGATGAGAGC
GCTCAAATGGATTTTGCTAAGGTAGAGAAGCGTGTGCGCACAACAGGCGGTGGAAGCACTGGAACTGTTAGGAATTTGCGTATCAGAGAAGACACTGCAA
AGTATCTTCTGAATCTTGATGTGAACTCTGCATATTATGATCCAAAAACCCGCTCGATGCGTGAGGATCCTTTGCCAGATGCAGACCCCAATGATAAATT
CTATGTGGGGTGATAACCAAAATAGACTTAGTGGACAAGCTCTTGAGTTCAAGCAACTCAATGTCCATGCATGGGAGGCTTTTGACAAGGGGCAGGATTT
CCATATGCAAGCAGCTCCATCTCAAGCTGAACTACTGTACAAGAGTTTCAAGATCAAGAAGGAGAAGTTGAAATCTGAAAGCAAGGACAAAATTATGGAG
AAGTATGGGAATGCTGCATCTGACGAACCAATCCCTCGTGAGCTTCTTCTTGGGCAAAGTGAAAAAGAGATTGAGTATGACCGGACTGGTCGCATAATCA
AAGGACAGGATGTAGCTCTTCCTAAGAGCAAATATGAAGAGGATGTCCTAATTAATAACCACACAACAGTGTGGGGTTCATGGTGGAAAGATCATCAATG
GGGCTATAAGTGCTGCAAGCAGACTATTAAAAATAGTTATTGCACAGGCCTTGCTGGAATCGAGGCTGCTGAAGCATCAGCTGATTTGATGAGGGAAAAT
ATGGCCCGCAAGGAGGCTGCCGAAGAGGAACCTGTACGACAAGAAGAAAAGAAACTAGCCACTTGGGGAACAGATATTCCTCAGGATCTTGTTCTCGACC
AGAAGTTGCTTGAGGAATCCTTAAAGAAGGAGGCAAAGAGGAAGAAGGAAGAGATGGACGAAAGAAAGAGAAAGTACAATGTGAAGTGGAATGACGAGGT
CACTGCGGAAGACATGGAGGCCTACCGTATGACAAGAGTCCGCCACGACGATCCTATGAAAGATTTTCTCAATTAGGCTTTCATGTCCCCTGGTTGCGTG
GCCTATGCCTGAACTCCTTCTGCTGCCTGTCCATCCTTTGCCGGATTGTTGTGTCTGTATTCTCTGGGTGTCTAGGAAGACGGGATGGGATGGCATGCCA
GCTCGTGAGTTACTGATGTTGTGAAGTACAGATATGATCGCTTGATGTCCAAAGGCAGAACGAAGTTTGTTCTCATATGTTCTTTGTAACCTCCTTCCTG
GTAACCATGGCATACGCCACTCATATGGATATTG
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