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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig16924  (registered. 2007)
Contig Information
Length 1646 bp
Clones 5 Clones [Download: TSV  ,  FASTA ]
Wh_KMV Shoot grown with continuous light after cold treatment 2
Wh_SHC Shoot grown with cold treatment 2
Wh_VHS Shoot with heat shock treatment 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0332100 [Oryza sativa (japonica cultivar-group)] >gi|53791609|dbj|BAD54740.1| putative neutral invertase [Oryza sativa Japonica Group] >gi|53792532|dbj|BAD53496.1| putative neutral invertase [Oryza sativa Japonica Group] >gi|113532462|dbj|BAF04845.1| Os01g0332100 [Oryza sativa (japonica cultivar-group)] >gi|215767913|dbj|BAH00142.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1956
Evalue 0
Total Hit Count 182
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig16924 
CATTTGAGGAGATTCTGGATCCTGACTTTGGTGAATCAGCTATTGGCCGTGTAGCTCCAGTTGATTCTGGACTTTGGTGGATTATCTTACTGAGAGCATA
CTGCAAGATTACAGGAGACTATTCATTGCAAGAAAGAGTGGATGTGCAAACCGGGATTAAGCTGATCTTGAGTTTGTGTTTGTCTGATGGGTTTGACATG
TTCCCCACTTTACTGGTCACAGACGGATCATGCATGATAGACAGGAGGATGGGGATACACGGGCATCCTCTTGAGATTCAAGCTTTGTTCTATTCTGCTC
TGAGATGCTCAAGGGAAATGATTGTTATGAACGAAGGCTCAAAACACCTCCTCCGAGCCATCAACAACAGGCTCAGTGCATTGTCTTTTCACATTAGGGA
GTACTACTGGGTCGATATGAATAAGATAAACGAGATCTACAGATACAAGACAGAAGAATACTCACATGACGCAACTAACAAATTTAACATTTATCCCGAG
CAAATTCCTTCCTGGCTTGTTGATTGGATTCCTGAGAAAGGGGGTTATCTTATTGGGAATCTGCAGCCAGCTCACATGGATTTTAGGTTCTTCTCACTTG
GCAACCTTTGGGCCATATCTTCATCTCTAACTACTCCAACACAAGCCGAGGGAATACTTAGCCTTATTGAAGAGAAATGGGATGATCTTGTAGCAAATAT
GCCCGTCAAGATCTGTTACCCTGCAATGGAATATGATGAATGGCGCATTATTACAGGCAGTGACCCTAAGAACACCCCATGGTCATATCATAATGGTGGA
TCTTGGCCAACCCTACTGTGGCAGTTTACACTGGCCTGCATCAAAATGGGAAGACCAGAGTTGGCCCGCAGGGCCATTGCAGTGGCCGAGGAGAAGCTCT
CAGCTGACAAGTGGCCAGAATACTATGACACCCGGTCTGGAAGATTCATTGGGAAGCAGTCACGGTCATATCAGACATGGACTATTGCTGGTTTTCTGAC
CTCCAAGATGTTGCTGGAAAACCCAGAGCTGGCTTCTATCCTGACCTGTGATGAGGATCTTGAGCTCCTTGAAGGCTGTGCTTGCTGCCTCTCGAAGAGG
ACTAGATGCTCACGACGTGCGGCCAAATCAGATATCATTGGGTAAAACAGCAGAAACCCTTCTACTCTTGCTCCTCCGCACACAAGTATATGATCGACTG
AGAATTAACTGAAGTGGATAAACTCTAGCCATGTACTTACAAATCAGATATCATTGGGTAAAACAGCAGAAACCCTTCTACTCTTGCTACTCCGCGCACA
AGTATACGATCGACTGAGAATTAACTGAAGTGGATACACTCTAGCCATGTATATTATAGGTTTACGTTAGATATCCATCCATTCATTCATTCCCTCAATG
TGCGCTCATTCTTTTTTGCTGAGCCGCCATTGATGGGAACTGCCCTGGGTGATACCGGGTGGTCTAGAAGAGAATCGCCATTTTATGTTGGGAGCTCTCA
TTTACACACAAAAGAGTAATTTGTTCTTGTATCGGTCACCTGCCACTCCTGACTCGGGAGTGATGCCAAGTCCTGACGAGTATATCTCTATCAGCATTTG
AGCTGTATGTTGCATTATTTGCAAAACTGAGACTCTGTACCAATGT
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