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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25011  (registered. 2007)
Contig Information
Length 1027 bp
Clones 53 Clones [Download: TSV  ,  FASTA ]
Wh_EM Dormant seed with water absorption 2
Wh_EMC Dormant seed with cold treatment after water absorption 2
Wh_EMI Dormant seed with water absorption after breaking 9
Wh_KMP Shoot grown under continuous light 6
Wh_KMV Shoot grown with continuous light after cold treatment 8
Wh_RDr Root of dessiccated seed 5
Wh_SHC Shoot grown with cold treatment 6
Wh_SHDr Shoot grown with dessication 11
Wh_VHS Shoot with heat shock treatment 1
Wh_VSCB Liquid cultured tissue 3
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit superoxide dismutase4 [Zea mays] >gi|134597|sp|P23345|SODC4_MAIZE RecName: Full=Superoxide dismutase [Cu-Zn] 4A >gi|6018682|emb|CAB57992.1| superoxide dismutase-4AP [Zea mays]
Score 709
Evalue 9.20757e-73
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25011 
GTCCACCACCACCTCTGCCACCGGCTCTGCTCTATTTAAGCTAGGCCGCCGGCCCTCGGTTCGCGAGTCTTCTGCAGAGCATCATCCATCCCATCCCCAG
GGTCATAAACCCAAGTCGGACTCGCCTTCCTCCTCGCCAACTACTCCTCTCCTCTCCTCCGCGCATCGCACCGGGGTCACCTGAGGTAGATCACACACAC
AATGGTGAAGGCTGTGGCTGTGCTTACCGGCAGTGAGGGTGTCAAGGGCACCATCTTCTTCACCCAGGAGGGAGAGGGCCCGACCACCGTGACGGGAAGT
GTCACCGGACTCAAGGAAGGGCTCCACGGCTTCCATGTGCACGCTCTTGGCGACACCACCAATGGCTGCATGTCAACTGGACCACACTTCAACCCCGCTG
GTCATGTGCATGGGGCACCCGAAGATGAAATCCGCCATGCTGGTGATCTTGGAAATGTGACAGCTGGAGTGGATGGTGTTGCTAGCATCAATATTACTGA
CTGCCATATCCCCCTTACTGGACCAAATTCAATTGTTGGCCGTGCTGTTGTCGTCCATGGTGATGCTGATGATCTTGGCAAGGGTGGACATGAGCTGAGC
AAGAGCACTGGAAACGCTGGTGCACGTGTTGCTTGCGGAATCATCGGGCTCCAGGGCTAAGATGTCATCTTCGCCGACCAACGTCGCACAGATATGGGAA
CCTTTTCAGAATGCAGATTTGCAATCTCTATTCTAAATAAGCACATGATCTTTGATCACTTGTTAGTGTGCACCAGTCGTGTCAATTCCTATGTGTTACT
CTGAACTTTATCGCTGTCATTTGGCTATCGAGATGTGTGACTGGAACAGTTCTGTCAAGTGCTTGTGGATCTGTTGTTCGCTACTAGCTCTGGACGTGTT
TACAGAAAACGAGAGAGGTTTCAGATTTCATCATATATCTTGTAGAGCTACATTCATCTTGCAACGCCACATCCGTGCATCTGGATACGCTCCATGTGTT
CTGGTGATTCTTTTTACAAAAAAAAAA
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