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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig25397  (registered. 2007)
Contig Information
Length 2259 bp
Clones 265 Clones [Download: TSV  ,  FASTA ]
Wh_CSEC Callus 20
Wh_DPA20 Seed DPA20 2
Wh_EM Dormant seed with water absorption 32
Wh_EMC Dormant seed with cold treatment after water absorption 19
Wh_EMI Dormant seed with water absorption after breaking 53
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 2
Wh_HGCPCDAM Anther at meiosis of MT4B CS wheat 2
Wh_KMP Shoot grown under continuous light 16
Wh_KMV Shoot grown with continuous light after cold treatment 25
Wh_MS Seed DPA5 of DT3DL CS wheat 9
Wh_OKCS Seed DPA5 11
Wh_PCDAM Anther at meiosis 2
Wh_RDr Root of dessiccated seed 15
Wh_SHC Shoot grown with cold treatment 4
Wh_SHDr Shoot grown with dessication 8
Wh_V4816 Shoot grown under cold condition for 16days 6
Wh_V483 Shoot grown under cold condition for 3days 6
Wh_VABA Shoot with ABA treatment 2
Wh_VSCB Liquid cultured tissue 26
Wh_VWD Shoot grown with dessication 5
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0821100 [Oryza sativa (japonica cultivar-group)] >gi|29124135|gb|AAO65876.1| heat shock protein cognate 70 [Oryza sativa (japonica cultivar-group)] >gi|108711797|gb|ABF99592.1| Heat shock cognate 70 kDa protein 2, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113550195|dbj|BAF13638.1| Os03g0821100 [Oryza sativa (japonica cultivar-group)] >gi|125588425|gb|EAZ29089.1| hypothetical protein OsJ_012572 [Oryza sativa (japonica cultivar-group)] >gi|215697587|dbj|BAG91581.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1077
Evalue 0
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig25397 
TTTTTTTTTTAGGGTAGTCCAAATAATAAGCATTAAGCTGAAATCAACAATGAGCCAAAACATGGCATCATTGCATTGTTCACGACACACACAAGTCTCG
TGATGCTACAGACCAAAAAGTACAACAAAACTTCCAGCCCAGGTGATATGATTGGCACCCAGGACTGAATAAAATGGTGTATAGTGTATTTCTCACTATA
TAAAAGCGACTAACTTAGTCGACCTCCTCGATCTTGGGGCCAGCACCGCCGCTCGCAGCCGGCGCGTCCTCGTCCATGCCTCCGGGCATGCCAGCACCGG
CGCCCTGGTACATCTTGGCGATGATGGGGTTGCAGAGGCCCTCCAGCTCCTTCATCTTGTCCTCAAACTCGTCAACCTCACCGAGCTGGTTGGCGTCAAG
CCACTGGATCGCGGCGTCAACGGCGTCCTCGATCTTCTTCTTGTCATCAGCAGGCAGCTTGGAGGCGATCTTCTCGTCCTGGATGGTGTTCCTCATGTTG
TAGGCGTAGTTCTCCAGGGAGTTCTTGGCGTCAACCTTCTTCTTGTGCTCCTCGTCCTCAGACTTGTACTTCTCTGCGTCCTGGACCATCTTCTCAATGT
CGTCCTTGCTCAGCCTGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTGGCCAGTGGTCTTGTCCTCAGCAGAGACATTCAGGATACCGTTGGCATC
AATGTCGAAGCAGACAGTGATCTGGGGGAACACCCCTGGGGCGCAGGCGGGATGCCAGAGAGCTCAAACTTGCCGAGCAGGTTGTTGTCCCTGGTCCTTG
TCCTCTCACCCTCAAACACCTGGATGAGCACACCAGGCTGGTTGTCGGAGTAGGTGGAGAAGACCTGCTCCTTCTTGGTGGGGATGGTGGTGTTCCTGGT
GATGAGCACAGTCATGACTCCTCCAGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCCAGGAGGAGAAGGTCCTGCACCTTCTCGTTCCCCTCACCG
CTGAGGATTGCAGCCTGGACGGCAGCACCGTAGGCAACAGCTTCATCAGGGTTGATGCTCTTGCAGAGCTCCTTCCCGTTGAAGAAGTCCTGCAGCAGCT
GCTGAACTCTGGGGATTCTGGTGGAACCACCAACAAGCACAACATCATGGATAGTGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACTGGCTC
CATGCACTTCCTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAGAAATCAACTCCCTCGAAGAGTGAATCGATCTCAATG
GTGGTTTGGGCAGTGGAAGAAAGGGTCCTCTTCGCCCTCTCACAAGAAGTCCTGAGCCTTCTCAAAGACCTGGGGTTTCCACTGATATCCTTCTTGTGCT
TCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAAAGTCCTCCCCCACCAAGGTGAGTGTCACCAGCCGTGGCCTTCACCTCAAAAATAC
CCTCCTCAATGGTAAGGAGAGAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCTTCTCACCGACACTGGTAGCCTTCTTGTCAAGACC
ATAAGCAATTGCAGCTGCTGTTGGGCTCGTTGATGATACGCATCACATTAAGACCAGCAATAACACCGGCATCCTTGGTTGCCTGCCTCTGGGAATCATT
GAAGTAAGCAGGCACGGTGACAACAGCATTCTTAATAGTTACTCCTAGGTAAGCCTCAGCGATCTCACGCATCTTGATGAGGACCATGGAAGAAATTTCT
TCAGCTGAGAACTGCTTGTCCTCACCCTTGTACTGCACTACAATCATAGGCTTGTCTGCGGGGCCAGGAATAACCTTGTACGGCCACATCTTAATATCAC
TCTGGACAGGGGCATCAGCAAACCTTCTGCCAATAAGACGCTTCGCATCGAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCC
GATGAGGCGCTCCGAGTCGGTGAAGGCGACGTACGAGGGCGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCGGTCGTGCTGCCACACGCCG
ACGCACGAGTAGGTGGTGCCGAGGTCGATGCCGATGGCCGGCCCCTCGCCCTTGGTCGGCGCCATGGCTCTAGCTAGATCGAGAGGAAGGAAGCTAAGCT
AGCTATGGAGCTAGGGTTAGGGTTTGTCGAGCCTTTGCGCAGCTGCTGGCGGCGGCTGC
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