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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig22458  (registered. 2007)
Contig Information
Length 989 bp
Clones 12 Clones [Download: TSV  ,  FASTA ]
Wh_EMC Dormant seed with cold treatment after water absorption 1
Wh_KMV Shoot grown with continuous light after cold treatment 4
Wh_RDr Root of dessiccated seed 4
Wh_V4816 Shoot grown under cold condition for 16days 1
Wh_V483 Shoot grown under cold condition for 3days 1
Wh_VSCB Liquid cultured tissue 1
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit ARF1A1c (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] >gi|543841|sp|P36397|ARF1_ARATH RecName: Full=ADP-ribosylation factor 1; Short=AtARF1 >gi|166586|gb|AAA32729.1| ADP-ribosylation factor >gi|2275195|gb|AAB63817.1| ADP-ribosylation factor 1 [Arabidopsis thaliana] >gi|18650622|gb|AAL75910.1| At2g47170/T3D7.2 [Arabidopsis thaliana] >gi|20198224|gb|AAM15469.1| ADP-ribosylation factor 1 [Arabidopsis thaliana] >gi|21592942|gb|AAM64892.1| ADP-ribosylation factor 1 [Arabidopsis thaliana] >gi|22655408|gb|AAM98296.1| At2g47170/T3D7.2 [Arabidopsis thaliana]
Score 904
Evalue 2.13117e-95
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig22458 
CGGATCAACTATACACAGGAACAAGATTAATCACGCGCAGAATACATTTCGGTTCACAAAACCGGGGCAGGATCATCATCATCACTCATCAGGCTCAGGC
CAGGAGCACCTGACATGGTATCATTTTCACATAGCATAAAGGGTTTCATCGTGTGTACATTCAATCATTGATACAACATAGTAGCAGTGTGATAACAGCT
CAAAGATCGAGCTTACAAAGACATGTCAACACTCTGGCAGCATTTTAACATGCCTACATATTCCAGTCATTTGTCCAGCCGCTAGTTGCTTCTGCGGCCC
TGCCAATCCATTGGAAGCCTTCAGGACTTGCTGGCTATGTTGTTGGAGAGCCAGTCCAACCCTTCATATAGACCCTCTCCACTTGTGGCGCAAGCACTCT
GGATATACCAGTGTCGCTGACGCAGAGAGTGTAGACCAAGCTTATCTGTTATTTCAGCAGCATTCATGGCATTGGGAAGATCTTGCTTGTTAGCAAAAAC
AAGCAATACAGCATTGCGCAGCTCATCCTCATTCAGCATCCTGTGGAGCTCATCTCTTGCCTCAGCAATACGGTCTCTGTCGTTGCTGTCAACAACAAAG
ATAAGGCCCTGAGTGTTCTGGAAGTAGTGCCTCCACAAAGGCCTTATCTTGTCCTGGCCACCAACATCCCAAACAGTGAAGCTGATGTTCTTATACTCTA
CTGTCTCCACGTTGAACCCGATGGTGGGGATGGTGGTGACGATCTCGCCGAGCTTGAGCTTGTACAGGATGGTGGTCTTCCCGGCGGCGTCGAGGCCGAC
CATCAGGATCCGCATCTCCTTCTTGGCGAACAGCGCCCCGAACAGCGTCCCGAACGACAGCCCCATCGATCTCCCTACCAAACTTCTCCTCCGCCGCCTC
CTCCTCTCCTCTCCTCTCCTCTTCTGTCCTTGGATGGAATCGCCCAAAGCACAAGCGAGTAGAGGCTACGGAGACGCAGAGGGAGGTGT
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