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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig16028  (registered. 2007)
Contig Information
Length 874 bp
Clones 5 Clones [Download: TSV  ,  FASTA ]
Wh_RDr Root of dessiccated seed 1
Wh_SHC Shoot grown with cold treatment 2
Wh_V4816 Shoot grown under cold condition for 16days 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0911200 [Oryza sativa (japonica cultivar-group)] >gi|56784390|dbj|BAD82429.1| putative ribophorin II precursor [Oryza sativa Japonica Group] >gi|113534690|dbj|BAF07073.1| Os01g0911200 [Oryza sativa (japonica cultivar-group)] >gi|215715263|dbj|BAG95014.1| unnamed protein product [Oryza sativa Japonica Group]
Score 790
Evalue 2.86973e-82
Total Hit Count 126
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig16028 
TTTTTTTTTTAACAAATCCAGCCTATTTAGTAAACATCAATGCATCATACATGAAGGTGAGGTCCTACCACTTCAGTAAACATCGGTGCATAAAACATGA
AGGTGAGGTCCTACCACTTCTCTAGTACCAGGATTCTTGGCACCCACTACAAAATGACACCCAGTTGTCCCTCAAAACTCAAGTTGCGCAAGAACTCGGT
CAGGATCTCAAGCAAAAGCATTTGCAGAACCCAAGCAACTGCCACTGCCCGAAAATTGATGATCACGCATTCTTCGCATCTTCCCATCAAGCAGTCTTCT
GTTTTGCTGCCGTGTTGGAAAGATAAGAAAGGGTCCTATGGCCGACGAACACAAGGAACACGCCGAGGAAGCTGAGGTACTTCAGAGTTGTGAAAAGATC
CAGCTTAACCCAGAAGAGAACATAGAGCAACAGTACTGCTCCGATTCCGGCATGGAAGAGTGATGCGAATGCAGCTGGTCCTGGCAGGGAAGGGAAGTTC
TTCAAGTTGACTCCCAGACGCATAAGCCCAATCAAGAACCCAATGAAAGGGAGGAGCGTGAGGCCAGTAAATGCAAGGGAGACTTCCTGCGGTGGCCTCT
TCTCTGGCACACGGAATATGTGTTCTATCTCCTTCTGTGGCCTAAACTTTGCTAACGGGTCAACAGCTTGTGCCGGAGGACGTGGGGCCTTTTCTGGGGC
CTCCGGCAAGTCCAACTCCAATTGGCCAAGGGCTCGTAGGAACGAATTTTCCATTGAAGCATCACCAACTGAAAGCTCGAGGTCATATGTTCCCGAAAGG
TAGTAAAATTTCTCTACCAATCCAAGAAAATCTAGAACAATTTTGAATTGCCTCACAGAACCCTGGCACCACAA
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