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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_KMV_all.Contig2554
Contig Information
Length 1031 bp
Tissue Shoot grown with continuous light after cold treatment
Clones 22 Clones [Download: CSV  ,  FASTA ]
whkv10d08    whkv7a11    whkv11f22    whkv13c14    whkv13e16    whkv16e16    whkv16j10    whkv18a17    whkv18c19    whkv19d15    whkv19m24    rwhkv10d08    rwhkv7a11    rwhkv11d08    rwhkv11f22    rwhkv13e16    rwhkv16e16    rwhkv16j10    rwhkv18a17    rwhkv18c19    rwhkv19d15    rwhkv19m24   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza sativa Japonica Group] >gi|113535731|dbj|BAF08114.1| Os02g0197600 [Oryza sativa (japonica cultivar-group)] >gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group] >gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_005582 [Oryza sativa (japonica cultivar-group)] >gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1080
Evalue 8.83771e-116
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_KMV_all.Contig2554 
TAATTTTCATAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGGTACAAATTTACATTTTACACCCACCCTCGCATGTATACCTCTCGCACGCT
CACGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTG
TTGTTGACGGGGTCGGAGAGGTGGTCGAGGAGGTTCTGGAAGGGCCCGACGCCGGTGAAGATGGCCTGCAGGGACATGCCGAGGAAGGCGAGCATGGCGA
GGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGCTCTTGGTGCCGAACCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGC
GGGGTCGCCGGAGCCACCGAGGTACTTCTCGAGGCCCAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCG
AAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTAGGGGTCGGCCCAGTACTGGTAGGTGCCTGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGA
TCGCCGTCTCCGGGGGCACCAGACCCACCTTGCCCAGGGCCTCCGGGGCGATCATGCCCACCACCCCCATCATCGCCGTCCGGCCGTTGAAGATCTCGCC
GTAGGCCAGCCACCTGGGCTCGATGAACCCGCCGGTGCCCTCTGGGTCGGACAGCCCCAAGGGGTCGAAGCCAAAGTCACCGGGCAGCGTGCCGTCGAGG
TAGGTGAGGGACTGCTTGGACGCAAACCACAGCTGCCTGTTGTCATTTTGCTTGGCAGGGGGGCTGGAAGATGCCCTGACGACGAAGGGGGACTTCCGGG
AGGAAGACGACCTGGAGATGGAAGACTGCAGAGGCCTCCCCAGCAGCTGCCTCCCAGAGAGAAGACCCTGGGCCGCCATTGTTCCTGCAAGCTCCTCCTC
CTCCTGCTCCGAGAGATGAGGCAGGCGTGGT
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