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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

MUGEST2003_all.Contig24538  (registered. 2007)
Contig Information
Length 1738 bp
Clones 32 Clones [Download: TSV  ,  FASTA ]
Wh_DPA20 Seed DPA20 3
Wh_EM Dormant seed with water absorption 2
Wh_EMC Dormant seed with cold treatment after water absorption 4
Wh_EMI Dormant seed with water absorption after breaking 2
Wh_GCPCDAM Anther at meiosis of DT4B CS wheat 5
Wh_KMV Shoot grown with continuous light after cold treatment 2
Wh_MS Seed DPA5 of DT3DL CS wheat 2
Wh_PCDAM Anther at meiosis 2
Wh_RDr Root of dessiccated seed 4
Wh_SHC Shoot grown with cold treatment 3
Wh_V4816 Shoot grown under cold condition for 16days 1
Wh_VABA Shoot with ABA treatment 2
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os02g0621700 [Oryza sativa (japonica cultivar-group)] >gi|75261432|sp|Q6K9N6|SUCB_ORYSJ RecName: Full=Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; AltName: Full=Succinyl-CoA synthetase, beta chain; Short=SCS-beta; Flags: Precursor >gi|47847769|dbj|BAD21546.1| putative succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial precursor [Oryza sativa Japonica Group] >gi|113536994|dbj|BAF09377.1| Os02g0621700 [Oryza sativa (japonica cultivar-group)] >gi|125540340|gb|EAY86735.1| hypothetical protein OsI_08117 [Oryza sativa Indica Group] >gi|125582922|gb|EAZ23853.1| hypothetical protein OsJ_007336 [Oryza sativa (japonica cultivar-group)] >gi|215704850|dbj|BAG94878.1| unnamed protein product [Oryza sativa Japonica Group]
Score 1893
Evalue 0
Total Hit Count 500
Registered year 2007
Contig Sequence     [ Download ]
>MUGEST2003_all.Contig24538 
CCTTCCGCAAGAAAGAAAGGAGGGGAGGGGAGAACAGAATAACATCAGACCCGCAAAGAGGAGGAGCGAAACAGCATCCCTGCCTTCCTCCACGCCCGTA
GGGTTTCCGGATCGGAGGAGCCCAAGCCGCCGCAGCCATGGCTTCGCGGATCGCTCGGGAGGTTGGCGTCGCGCACCCTCTCCGTCGCCGGCAAATGGCA
GCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGGGCGCGGAGTTGATGGGGAAGTTCGGGATCAACGTGCCCAAGGGCGCCGTGGTGGGGTCA
GTGCAGGAGGTCAAGGAAGTTTTGAAGAACGTCTTCCCCAGTGAGAAAGAGATAGTTGTGAAAAGCCAAATCCTTGCCGGTGGCCGTGGATTGGGAACTT
TCAAAAGTGGACTAAAGGGTGGTGTTCATATTGTTAAGGCTGAGGAGGCTGAAAGCCTTGCAGCTAAAATGCTTAACCAGGTCCTGGTAACAAAACAAAC
TGGTCCACAGGGGAAGGTTGTGGGCAAGGTCTACTTATGTGAGAAAATGTCACTTGTTAATGAGATGTACTTTGCGATCACCCTTGATAGGAAGACTGCT
GGTCCACTCATTATAGCTTGTGCTGAGGGAGGAACGAGTATTGAAGATCTTGCAGAGAAGTTCCCTGATAAGATCGTTAAGGTTCCTGTTGATGTATTCA
AGGGAATCACTGATGAGGATGCAGCTAAAGTTGTTGATGGTCTGGCACCAAAGACAGCAGACAGGCAATCTTCTATAGAACAGATTAAGAAGCTATATGA
ACTTTTCTGCAAGACCGACTGCACAATGCTGGAGATAAATCCTCTTGCCGAGACAGCTGATAAAAAGCTAGTTGCTGCTGATGCAAAGTTGAACTTCGAT
GATAATGCTGCGTTTAGGCAGAAAGAAATATTTGCACTGCGTGATACAACACAGGAGGACCCCAGAGAGGTGGCTGCTGCTAAAGCAGATTTGAACTACA
TCGGGCTTGATGGAGAGATTGGTTGCATGGTGAATGGTGCAGGATTGGCAATGGCTACGATGGACATCATTAAGCTGCATGGTGGTACACCTGCCAATTT
TCTTGATGTTGGTGGGAGTGCATCCGAGGGACAGGTTGTGGAAGCATTTAAGATATTGACTTCAGACGATAGAGTGAAGGCAATTCTAGTGAACATTTTT
GGAGGTATCATGAAATGTGACGTGATAGCAAGTGGAATAGTGAATGCAGCTAAACAGGTTGATCTTAAGGTCCCTGTTGTTGTTCGGCTAGAAGGCACCA
ATGTAGACCAAGGGAAAAGGATTCTTAAGGAAAGTGGAATGACATTGATCACTGCAGAGGATCTTGATGATGCTGCAGAGAAGGCTGTAAAAGCATCGGT
CAAATGATTAATGATTGTACCATATCAGTCTAAAGTTCTGTTTTCACTGGTACGAGAGGAGTGCTGCTCTCTTGCTTATTTCGGGGGCCGAAATCTTGAA
GTGCATTTTCTTTTGAAGTGGAGTGATTCCACCTTGGAGTTTTCCTTCAAACATGTGATCTTTGTGTTAATAAACCTATATGGGCACAAAATTGAGCAGC
CACTGTTATGAAGTTCAAGTAGGATTTACCTGTTTTGCCCGGATCAGCAGTCTACGTGTTGACGCTTCATTTGCCCTGTCAACTACTGCATCTTGCATCG
TAACTGCGCAGCCTAAGCTGTTAAAATCAAAAAAAAAA
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