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(Japanese only)
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Any comments or suggestions will be gratefully appreciated.
BLAST
Search
Parameters
Choose program to use and database to search:
Program
:
blastn (DNA query vs. DNA database)
blastx (Translated query vs. Protein database)
blastp (Protein query vs. Protein database)
tblastn (Protein query vs. Translated database)
tblastx (Translated query vs. Translated database)
Database :
Triticeae Full-Length cDNA(11,902seq)
Wheat EST Wh_ALL (556,545seq)
Wheat EST Wh_ALL Contigs (41,719seq)
- Wheat EST Wh (14,770seq)
- Wheat EST Wh_SL (12,573seq)
- Wheat EST Wh_dL (10,069seq)
- Wheat EST Wh_e (11,282seq)
- Wheat EST Wh_f (12,300seq)
- Wheat EST Wh_h (11,282seq)
- Wheat EST Wh_oh (10,349seq)
- Wheat EST Wh_r (10,502seq)
- Wheat EST Wh_yd (12,030seq)
- Wheat EST Wh_yf (11,072seq)
- Wheat EST Wh_CSEC (10,216seq)
- Wheat EST Wh_CSEC Contigs (3,861seq)
- Wheat EST Wh_DPA20 (11,308seq)
- Wheat EST Wh_DPA20 Contigs (3,951seq)
- Wheat EST Wh_EMC (10,210seq)
- Wheat EST Wh_EMC Contigs (4,250seq)
- Wheat EST Wh_EM (10,155seq)
- Wheat EST Wh_EM Contigs (4,375seq)
- Wheat EST Wh_GCPCDAM (9,424seq)
- Wheat EST Wh_GCPCDAM Contigs (3,915seq)
- Wheat EST Wh_HGCPCDAM (9,008seq)
- Wheat EST Wh_HGCPCDAM Contigs (3,745seq)
- Wheat EST Wh_KMP (11,354seq)
- Wheat EST Wh_KMP Contigs (4,153seq)
- Wheat EST Wh_KMV (10,742seq)
- Wheat EST Wh_KMV Contigs (4,117seq)
- Wheat EST Wh_MS (10,729seq)
- Wheat EST Wh_MS Contigs (4,136seq)
- Wheat EST Wh_OKCS (10,461seq)
- Wheat EST Wh_OKCS Contigs (3,898seq)
- Wheat EST Wh_PCDAM (9,205seq)
- Wheat EST Wh_PCDAM Contigs (3,220seq)
- Wheat EST Wh_RDr (10,635seq)
- Wheat EST Wh_RDr Contigs (4,272seq)
- Wheat EST Wh_SHC (10,658seq)
- Wheat EST Wh_SHC Contigs (4,297seq)
- Wheat EST Wh_SHDr (9,887seq)
- Wheat EST Wh_SHDr Contigs (3,704seq)
- Wheat EST Wh_V4816 (9,768seq)
- Wheat EST Wh_V4816 Contigs (2,950seq)
- Wheat EST Wh_V483 (9,183seq)
- Wheat EST Wh_V483 Contigs (2,825seq)
- Wheat EST Wh_VABA (9,042seq)
- Wheat EST Wh_VABA Contigs (2,976seq)
- Wheat EST Wh_VHS (9,102seq)
- Wheat EST Wh_VHS Contigs (2,318seq)
- Wheat EST Wh_VSCB (10,805seq)
- Wheat EST Wh_VSCB Contigs(4,343seq)
- Wheat EST Wh_VWD (10,395seq)
- Wheat EST Wh_atl (23,879seq)
- Wheat EST Wh_sct (25,616seq)
- Wheat EST Wh_atlal (25,819seq)
- Wheat EST Wh_sctal (24,171seq)
- Wheat EST Wh_thls (23,683seq)
- Wheat EST Wh_thkles (23,503seq)
- Wheat EST Wh_chan (24,162seq)
- Wheat EST Wh_chul (24,020seq)
38k array (38,839seq)
Bac clone (799,509seq)
- CSTAC01 (58,073seq)
- CSTAC02 (63,149seq)
- CSTAC03 (57,580seq)
- CSTAC04 (53,888seq)
- CSTAC05 (61,959seq)
- CSTAC06 (53,305seq)
- CSTAC07 (53,944seq)
- CSTAC08 (48,651seq)
- CSTAC09 (48,476seq)
- CSTAC10 (53,873seq)
- CSTAC11 (75,789seq)
- CSTAC12 (66,068seq)
- CSTAC13 (67,558seq)
- CSTAC14 (28,286seq)
- CSTAC15 (8,910seq)
nt (Nucleotide)
nr (Peptide)
Please specify the sequence data to reference.
File Upload
:
or COPY & PASTE
:
Options for BLAST Search
Filter
ON
OFF
Expect
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options:
Options for
BLAST Scope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits
Limit :
Hits
Number of HSPs :
All HSPs
Limit :
HSPs
Limit results by alignment length :
>
Limit results by range of query sequence :
-
Image width :
Copyright © 2009 NBRP-Wheat. All rights reserved.
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