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Species Database Institution keyword
Tomato A database for the tomato genome database
urlhttp://mips.gsf.de/proj/plant/jsf/tomato/		 MIPS (Munich Information Center for Protein Sequence)  
Rice AGI-AGCoL
urlhttp://www.genome.arizona.edu/		 Arizona Genomic Institute & Computational Laboratory  
Forest Tree Breeding Arborea
urlhttp://www.arborea.ulaval.ca/en/		 Université Laval  
Microbe.Others ARCHAebacterial Information Collection
urlhttp://riodb.ibase.aist.go.jp/archaic/ARCHAIC_J.html		 AIST Neuroscience Research Institute  
E.coli ASAP:a systematic annotation package for community analysis of genomes
urlhttp://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm		 University of Wisconsin - Madison  
Rice ASPGC
urlhttp://genome.sinica.edu.tw/		 Academia Sinica Plant Genome Center (Taiwan)  
B.subtilis B. subtilis complete genome
urlhttp://www.ncbi.nlm.nih.gov/genomes/framik.cgi?db=Genome&gi=27		 NCBI  
B.subtilis Bacillus subtilis Genome Database
urlhttp://bacillus.genome.jp/		 GenomeNet  
B.subtilis Bacillus subtilis Genome Database(BSORF)
urlhttp://bacillus.genome.ad.jp/		 GenomeNet for the B. subtilis community in Japan  
E.coli Bacterial Interspersed Mosaic Elements
urlhttp://www.pasteur.fr/recherche/unites/pmtg/repet/index.html		 The Institut pasteur In France  
E.coli, Yeast, Microbe.Others Bacterial Targets IGS -CNRS
urlhttp://www.igs.cnrs-mrs.fr/Bigs/		 Structural and Genomics Information Marseille, FRANCE  
Barley Barley Germplasm Database
urlhttp://shigen.lab.nig.ac.jp/barley/		 National Institute of Genetics  
Drosophila Berkeley Drosophila Genome Project
urlhttp://www.fruitfly.org/		 Consortium of the Drosophila Genome Center  
Rice BGI-RISe Database (Rice GD)
urlhttp://rise.genomics.org.cn/		 Beijing Genomics Institute (China)  
Silkworm Bombyx mori genome Map information system
urlhttp://www.nises.affrc.go.jp/sgp/BombMap.htm		 NIASES  
C.elegans C. elegans Genome Project
urlhttp://www.sanger.ac.uk/Projects/C_elegans		 Sanger Center  
Tunicata/Chordata Ciona savignyi Database
urlhttp://www.broad.mit.edu/annotation/ciona/		 Broad Institute  
Algae (plants), Algae (Microbe) CGC (Chlamydomonas Genetics Center)
urlhttp://www.chlamy.org/		 Duke University  
Rice NCBI Accession: NC_001320
urlhttp://www.ncbi.nlm.nih.gov/genomes/framik.cgi?db=Genome&gi=10013		 NCBI  
E.coli Colibri
urlhttp://genolist.pasteur.fr/Colibri/		 Intstitut Pasteur  
Drosophila COMPATIVE ANALYSIS OF THE D. melanogaster & D.pseudoobscura GENOMES　
urlhttp://pipeline.lbl.gov/cgi-bin/gateway2?bg=dm1		 VISTA  
Actinomycetes Corynebacterium diphtheriae Genome
urlhttp://www.sanger.ac.uk/Projects/C_diphtheriae/		 The Wellcome Trust Sanger Institute  
Mouse, Human COXPRESdb (co-expressed gene database)
urlhttp://coxpresdb.jp/		 The Institute of Medical Science, The University of Tokyo  
Rice CSRDB: Cereal small RNAs Database
urlhttp://sundarlab.ucdavis.edu/smrnas/		 NSF,UCDAVIS,USC  
Plant.Others Cucurbit Genomics Database
urlhttp://www.icugi.org/		 BARD grants and the International Cucurbit Genomics Initiative (ICuGI)  
Brassica TIGR Oilseed_rape Gene Index
urlhttp://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=oilseed_rape		 Dana Farber Cancer Institute  
E.coli Database of oligomerization domains from lambda experiments
urlhttp://dimer.tamu.edu/doodle/version.php		 Dept. of Biochemistry and Biophysics at Texas A & M University  
Forest Tree Breeding Dendrome Project
urlhttp://dendrome.ucdavis.edu/		 UC Davis  
Wheat DFCI Wheat Gene Index
urlhttp://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=wheat		 Dana Farber Cancer Institute  
Arabidopsis DFCI Arabidopsis Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=arab		 Dana Farber Cancer Institute  
Barley DFCI Barley Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=barley		 Dana Farber Cancer Institute  
C.elegans DFCI C.elegans Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=elegans		 Dana Farber Cancer Institute  
Drosophila DFCI Drosophila Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=drosoph		 Dana Farber Cancer Institute  
Amphibian DFCI Frog Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=xenopus		 Dana Farber Cancer Institute  
Pufferfish DFCI Fugu Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=fugu		 Dana Farber Cancer Institute  
Human DFCI Human Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=human		 Dana Farber Cancer Institute  
Medakafish DFCI Medaka Gene Index
urlhttp://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=o_latipes		 Dana Farber Cancer Institute  
Mouse DFCI Mouse Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=mouse		 Dana Farber Cancer Institute  
Rat DFCI Rat Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=rat		 Dana Farber Cancer Institute  
Rice DFCI Rice Gene Index
urlhttp://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=rice		 Dana Farber Cancer Institute  
Yeast DFCI S.cerevisiae Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=yeast		 Dana Farber Cancer Institute  
Yeast DFCI S.pombe Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=f_yeast		 Dana Farber Cancer Institute  
Beans DFCI Soybean Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=soybean		 Dana Farber Cancer Institut  
Tomato DFCI Tomato Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=tomato		 Dana Farber Cancer Institute  
Amphibian DFCI X.tropicalis Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=x_tropicalis		 Dana Farber Cancer Institute  
Zebrafish DFCI Zebrafish Gene Index
urlhttp://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=zfish		 Dana Farber Cancer Institute  
Dictyostelium dictyBase
urlhttp://dictybase.org/		 Northwestern University  
Dictyostelium Dictyostelium discoideum Genome Project
urlhttp://genome.imb-jena.de/dictyostelium/		 Fritz Lipmann Institute (FLI)  
Others DNABook Database
urlhttp://134.160.84.27/DNA-Book/		 RIKEN,Japan & JST  
Drosophila DrosDel Drosophila Isogenic Deficiency Kit
urlhttp://www.drosdel.org.uk/		 Department of Genetics, University of Cambridge, UK