SHIGEN Databases

Databases constructed at the National Institute of Genetics

* supported by N : National BioResource Project, G : Genetic Resource Committee/NIG, O : Other project

Category	Database	Information source	Accessions	^*N/G/O	Year (built-last updated)
Cell	ES Cell	Kyoto University	5	N	public (2003-2009)
Laboratory animals	Mouse Genetic Resources	NIG	182	G	public (1995-2010)
	Mouse Microsatellite	NIG	9,115	O/N	public (1997-2009)
	MSM / B6 gSNP	NBRP	459,265	O/N	public (1997-2008)
	BAC end	NBRP	103,566	N	public (2004-2008)
	CARD R-BASE	Kumamoto University CARD	1213	O	public (2001-2010)
	Experimental Animal	JSLA / NIG	1,633	G	public (2001-2006)
	JMSR (Japan Mouse Strain Resources)	5 organizations in Japan	7217	N/G	public (2001-2010)
Medakafish	Strain / BAC	NBRP	971,927	N	public (2003-2010)
Zebrafish	ZEBRA FISH	RIKEN BSI	164	N	public (2004-2010)
Xenopus	Strain / EST	NBRP	370,069	N	public (2004-2009)
Drosophila	Strains	NIG	11,244	N/G	public (1996-2010)
Drosophila	DGRC (Japan Drosophila Resources）	4 organizations in Japan	35,504	N	public (2004-2010)
C.elegans	Mutant Information	Tokyo Women's Medical University School of Medicine	3,698	N	public (2003-2010)
C.elegans	Promoter / Marker	NIG	176	N	public (2004-2009)
Silkworm	SilkwormBase	Kyusu University	428	N	public （2004-2009)
Chimpanzee	GAIN (japanese only)	GAIN	1,003	N	public （2002-2010)
C. Intestinalis	CITRES	University of Tsukuba	88	N	public（2008-2009)
Wheat	KOMUGI (Strains)	16 organizations in Japan	29,401	N/G	public (1996-2009)
	KOMUGI (EST)	8 organizations in Japan	568,447	N/G	public (1997-2009)
	Catalogue of Gene Symbols		2,511	N/G	public (2002-2009)
Rice	Oryzabase (Strains)	NBRP etc.	29,730	N/G	public (1996-2010)
	Strains	Kyusyu University	3,805	N/G	limited (2002-2005)
	Oryzabase ( Genes /Developmental Stages)		3,986	N/G	public (1996-2010)
Barley	Strains	Okayama University	5,636	N/G	public (1998-2009)
Barley	EST	Okayama University	134,928	N/G	public (2002-2009)
Arabidopsis	SASSC (Strains)-> RIKEN BRC		1,119	N/G	public (1998-2000)
Chrysanthemum	Chrysanthemum	Hiroshima University	212	N	public (2004-2008)
Bean	Legume Base	Miyazaki University	165,699	N/G	public (2004-2010)
Tomato	Tomato	University of Tsukuba	829	N	public（2010)
Algae	Genetic resources	National Institute for Environmental Studies	2,558	N	public (2004-2010)
E.coli	Strains	4 organizations in Japan	28,150	N/G	public (1999-2009)
	PEC (Genes)	Tokyo Metropolitan University	4784	G	public (1998-2009)
	PEC (Deletions)	Tokyo Metropolitan University	632	G	public （2004-2009)
	The Cloning Vector Collection	NIG	545	N	public (1995-2010)
Yeast	S. cerevisiae S. pombe	Osaka City University	83,009	N	public （2004-2010)
Microbe	Pathogenic microbes	4 organizations in Japan	29,831	N	public （2004-2009)
B.subtilis	B.subtilis	NIG in Japan	2,514	N	public （2008-2009)
Cellular slime molds	Cellular slime molds	University of Tsukuba	7,411	N	public (2008-2009)
Ontology DB	GOALL			N/G	public （2003-2010)
Portal site	NBRP (National BioResource Project)	25 organizations in Japan		N	public (2002-2010)
	GRC (Genetic Resource Committee)			G	public (1999-2009)
	WGR (Worldwide Genetic Resources)		698	N	public (2000-2009)
	JGR (Japan Genetic Resources)		77	N	public (2004-2008)

Collaborations

1: NBRP Resources Center Project

1-1:Morning Glory (Kyusyu University)

2 :Cooperation with other government

2-1: Oryzabase & Agriculture, Forestry,
Genetic Resources Information
2-2: Oryzabase & Agriculture, Forestry,
DNA Information

3: International Collaborations

3-1:Oryzabase & Gramene(Cornell) & IRRI
3-2:Participating in the International Plant Ontology Project
3-3:Wheat Gene Catalogue Project (Sydney)
3-4:Cooperating with ZFIN(Univ. of Oregon) on PATO

The number of accesses to SHIGEN databases

SHIGEN sub-projects

About

SHIGEN Databases