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SHIGEN Databases

Databases constructed at the National Institute of Genetics

* supported by N : National BioResource Project, G : Genetic Resource Committee/NIG, O : Other project

Category	Database	Information source	Accessions	^*N/G/O	Year (built-last updated)
Cell	ES Cell	NBRP	5	N	public (2003-2012)
Laboratory animals	Mouse Genetic Resources	NIG	142	G	public (1995-2011)
	Mouse Microsatellite	NIG	9,115	O/N	public(1997-2011)
	MSM / B6 gSNP	NBRP	459,265	O/N	public(1997-2011)
	BAC end	NBRP	103,566	N	public (2004-2009)
	CARD R-BASE	Kumamoto University CARD	1515	O	public (2001-2012)
	Experimental Animal	JSLA / NIG	1,531	G	public (2001-2010)
	JMSR (Japan Mouse Strain Resources)	9 organizations in Japan	8173	N/G	public (2001-2012)
Medakafish	Strain / BAC	NBRP	971,927	N	public (2003-2012)
Zebrafish	ZEBRA FISH	NBRP	99	N	public (2004-2011)
Xenopus	Strain / EST	NBRP	370,069	N	public (2004-2011)
Drosophila	Strains	NIG	12,312	N/G	public (1996-2012)
Drosophila	DGRC (Japan Drosophila Resources）	NBRP	40,385	N	public (2004-2012)
C.elegans	Mutant Information	NBRP	4,807	N	public (2003-2011)
C.elegans	Promoter / Marker	NBRP	187	N	public (2004-2011)
Silkworm	Silkworm	NBRP	456	N	public （2004-2011)
Chimpanzee	GAIN (japanese only)	NBRP	1,362	N	public （2002-2012)
Ciona intestinalis, Oxycomanthus japonicus	Ciona intestinalis - Oxycomanthus japonicus	NBRP	192	N	public（2008-2012)
Wheat	KOMUGI (Strains)	NBRP	20,648	N/G	public (1996-2012)
	KOMUGI (EST)	NBRP	775,117	N/G	public (1997-2011)
	Catalogue of Gene Symbols		2,860	N/G	public (2002-2011)
Rice	Oryzabase (Strains)	NBRP etc.	28,167	N/G	public (1996-2012)
	Strains	Kyusyu University	3,805	N/G	limited (2002-2005)
	Oryzabase ( Gene/Developmental Stages)		4,753	N/G	public (1996-2012)
Barley	Strains	NBRP	5,636	N/G	public (1998-2009)
Barley	EST	NBRP	134,928	N/G	public (2002-2009)
Arabidopsis	SASSC (Strains)-> RIKEN BRC		1,119	N/G	public (1998-2000)
Chrysanthemum	Chrysanthemum	NBRP	260	N	public (2004-2012)
Bean	Legume Base	NBRP	234,544	N/G	public (2004-2012)
Tomato	Tomato	NBRP	1,258	N	public（2008-2012)
Algae	Genetic resources	NBRP	2,949	N	public (2004-2012)
E.coli	Strains	NBRP	28,150	N/G	public (1999-2011)
	PEC (Genes)	NBRP	4739	G	public (1998-2011)
	PEC (Deletions)	NBRP	658	G	public （2004-2010)
	PEC W3110	NBRP	4438	G	public (2010)
	The Cloning Vector Collection	NBRP	545	N	public (1995-2010)
Yeast	S. cerevisiae S. pombe	NBRP	90,821	N	public （2004-2012)
Microbe	Pathogenic microbes	NBRP	28,510	N	public （2004-2012)
B.subtilis	B.subtilis	NBRP	2,514	N	public （2008-2009)
Cellular slime molds	Cellular slime molds	NBRP	7,838	N	public (2008-2011)
Ontology DB	GOALL			N/G	public （2003-2012)
Portal site	NBRP (National BioResource Project	NBRP		N	public (2002-2012)
	GRC(Genetic Resource Committee)			G	public (1999-2012)
	WGR(Worldwide Genetic Resources)		786	N	public (2000-2011)
	JGR(Japan Genetic Resources)		83	N	public (2004-2011)

Collaborations

1: Cooperation with other government

1-1: Oryzabase & Agriculture, Forestry,
Genetic Resources Information
1-2: Oryzabase & Agriculture, Forestry,
DNA Information
1-3: Oryzabase & RAP

2: International Collaborations

2-1:Oryzabase & Gramene(Cornell) & IRRI
2-2:Participating in the International Plant Ontology Project
2-3:Wheat Gene Catalogue Project (Sydney)
2-4:Cooperating with ZFIN(Univ. of Oregon) on PATO
2-4: NBRP C.elegans & WormBase
2-5: NBRP Yeast & GeneDB & SGD

The number of accesses to SHIGEN databases

SHIGEN sub-projects

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SHIGEN Databases