RRC ID 45755
著者 Jaramillo-Lambert A, Fuchsman AS, Fabritius AS, Smith HE, Golden A.
タイトル Rapid and Efficient Identification of Caenorhabditis elegans Legacy Mutations Using Hawaiian SNP-Based Mapping and Whole-Genome Sequencing.
ジャーナル G3 (Bethesda)
Abstract The production of viable embryos requires the coordination of many cellular processes, including protein synthesis, cytoskeletal reorganization, establishment of polarity, cell migration, cell division, and in Caenorhabditis elegans, eggshell formation. Defects in any of these processes can lead to embryonic lethality. We examined six temperature-sensitive mutants as well as one nonconditional mutant that were previously identified in genetic screens as either embryonic lethal (maternal-effect or zygotic lethal) or eggshell defective. The responsible molecular lesion for each had never been determined. After confirmation of temperature sensitivity and lethality, we performed whole-genome sequencing using a single-nucleotide polymorphism mapping strategy to pinpoint the molecular lesions. Gene candidates were confirmed by RNA interference phenocopy and/or complementation tests and one mutant was further validated by CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats)/Cas9 gene editing. This approach identified new alleles of several genes that had only been previously studied by RNA interference depletion. Our identification of temperature-sensitive alleles for all of these essential genes provides an extremely useful tool for further investigation for the C. elegans community, such as the ability to address mutant phenotypes at various developmental stages and the ability to carry out suppressor/enhancer screens to identify other genes that function in a specific cellular process.
巻・号 5(5)
ページ 1007-19
公開日 2015-3-4
DOI 10.1534/g3.115.017038
PII g3.115.017038
PMID 25740937
PMC PMC4426357
MeSH Alleles Animals CRISPR-Cas Systems Caenorhabditis elegans / genetics* Caenorhabditis elegans Proteins / genetics* Chromosome Mapping Female Genes, Essential Genetic Complementation Test Genome, Helminth* Genomics* / methods High-Throughput Nucleotide Sequencing Male Mutation* Polymorphism, Single Nucleotide Selection, Genetic
IF 2.781
引用数 9
WOS 分野 GENETICS & HEREDITY
リソース情報
線虫 tm2713 tm2429 tm1761