遺伝子 - 詳細

詳細 - 遺伝子

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Basic Information
CGSNL 遺伝子シンボル QSH1
遺伝子シンボルシノニム qSH1, qsh1, qSH-1, RIL1, OsRIL1
CGSNL 遺伝子名 Shattering (QTL)-1
遺伝子名シノニム QTL of seed shattering in chromosome 1, RI-LIKE1, erticillate rachis-like 1
タンパク質名
対立遺伝子 qSH1-A, qSH1-W, qSH1-T, qSH1-N, ril1, ril1-1
染色体番号 1
解説 Nipponbare allele. EU999788-EU999861 (Oryza sativa and other wild rice species). a homeodomain gene. BEL1-type homeobox gene. AB071330-AB071333. AY886122-AY886152 and DQ374913-DQ374940 (O. sativa and other wild rice species, partial cds). one of the two rice REPLUMLESS orthologs. GO:1902182: shoot apical meristem development. TO:1000009: branch angle. TO:0000930: seed shattering.
形質クラス 栄養器官 - 稈
生殖器官 - 花序
種子 - 生理的な特色 - 脱粒性
耐性、抵抗性 - ストレス耐性
発現
Sequence/Locus
cDNA Accession No. AK060936
MSU ID LOC_Os01g62920.1
RAP ID Os01g0848400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
マップ
位置情報(cM)
リンケージマップ Classical linkage map
文献
Mun B.G., Shahid M., Lee G.S., Hussain A., Yun B.W.
Int J Mol Sci 2022  23(21) 
A Novel rhs1 Locus in Rice Attributes Seed-Pod SHATTERING by the Regulation of Endogenous S-Nitrosothiols.
Jiang L., Ma X., Zhao S., Tang Y., Liu F., Gu P., Fu Y., Zhu Z., Cai H., Sun C., Tan L.
Plant Cell 2019  31(1)  17-36
The APETALA2-like transcription factor SUPERNUMERARY BRACT Controls Rice Seed Shattering and Seed Size.
Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.
Nature 2018  557(7703)  43-49
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.
Nat. Genet. 2017  49(5)  811-814
Signatures of adaptation in the weedy rice genome.
Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014  46(9)  982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
Purugganan M.D.
Nat. Genet. 2014  46(9)  931-2
An evolutionary genomic tale of two rice species.
Ishii T., Numaguchi K., Miura K., Yoshida K., Thanh P.T., Htun T.M., Yamasaki M., Komeda N., Matsumoto T., Terauchi R., Ishikawa R., Ashikari M.
Nat. Genet. 2013  45(4)  462-5, 465e1-2
OsLG1 regulates a closed panicle trait in domesticated rice.
Nakano T., Ito Y.
Plant Biotechnology 2013  30  209-216
Molecular mechanisms controlling plant organ abscission
Zhou,Y., Lu,D.F., Li,C.Y., Luo,J.H., Zhu,B., Zhu,J.J., Shangguan,Y.Y., Wang,Z.X., Sang,T., Zhou,B. and Han,B.
Plant Cell 2012  24(3)  1034-1048
Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1
Thurber,C.S., Reagon,M., Gross,B.L., Olsen,K.M., Jia,Y. and Caicedo,A.L.
Mol. Ecol. 2010  19(16)  3271-3284
Molecular evolution of shattering loci in U.S. weedy rice
Zhang,L.B., Zhu,Q., Wu,Z.Q., Ross-Ibarra,J., Gaut,B.S., Ge,S. and Sang,T.
New Phytol. 2009  184(3)  708-720
Selection on grain shattering genes and rates of rice domestication
Konishi S,Ebana K,Izawa T
Plant Cell Physiol. 2008  49  1283-93
Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.
Onishi,K., Takagi,K., Kontani,M., Tanaka,T. and Sano,Y.
Genome 2007  50(8)  757-766
Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication
Tang,T., Lu,J., Huang,J., He,J., McCouch,S.R., Shen,Y., Kai,Z., Purugganan,M.D., Shi,S. and Wu,C.-I.
PLoS Genet. 2 (11), e199 REMARK Publication Status: Online-Only 2006  2(11) 
Genomic Variation in Rice: Genesis of Highly Polymorphic Linkage Blocks during Domestication
Konishi S, Izawa T, Lin SY, Ebana K, Fukuta Y, Sasaki T, Yano M.
Science 2006  312(5778)  11392-1396
An SNP caused loss of seed shattering during rice domestication.
TextPresso Search Search textpresso for QSH1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
オントロジー
Gene Ontology response to nitrosative stress( GO:0051409 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
maintenance of shoot apical meristem identity( GO:0010492 )
meristem maintenance( GO:0010073 )
internode patterning( GO:0080006 )
Trait Ontology grain shattering( TO:0000473 )
plant height( TO:0000207 )
internode length( TO:0000145 )
phyllotaxy( TO:0006014 )
shoot apical meristem development( TO:0006020 )
secondary branching of inflorescence( TO:0000142 )
primary branch number( TO:0000547 )
Plant Ontology -
関連系統
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形質画像
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更新日
2023-02-13 09:47:15.421


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