遺伝子 - 詳細

詳細 - 遺伝子

Basic Information
CGSNL 遺伝子シンボル	LK3
遺伝子シンボルシノニム	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2
CGSNL 遺伝子名	LONG KERNEL 3
遺伝子名シノニム	長粒３, long kernel 3, long kernel-3, grain size, grain length and weight protein, GRAIN SIZE 3, G gamma subunit GS3, Heterotrimeric G Protein gamma3 Subunit, style length 3, THEROMOTOLERANCE 2
タンパク質名
対立遺伝子	GS3-1, GS3-2, GS3-3, GS3-4, OsGS3-5, OsGS3-6, OsGS3-7, gs3, GS3-A, GS3-B, GS3-C, gs3-1, gs3-2, gs3-9, gs3-21, OsSYL3AA, OsSYL3CC, GS3MH, GS3ZS, tt2
染色体番号	3
解説	lk3(t)は Lkf と同一かもしれない。putative transmembrane protein; functions as a negative regulator for grain size. DQ355996. AB488664. OsGW3 in Xia et al. 2015. TO:0011009: style length. PO:0030123: panicle inflorescence. GO:1904276: regulation of wax biosynthetic process. GO:1900366: negative regulation of defense response to insect.
形質クラス	QTLの特性 - 収穫と生産性栄養器官 - 稈生殖器官 - 穂生殖器官 - 出穂期種子 - 形態学的な特色 - 粒形耐性、抵抗性 - ストレス耐性生殖器官 - 小穂、花、頴、芒耐性、抵抗性 - 害虫抵抗性
発現
Sequence/Locus
cDNA Accession No.	CT835094
MSU ID	-
RAP ID	Os03g0407400
Links	Oryzabase Chromosome View ( IRGSP 1.0 / Build5 ) RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List (Test version)	-
マップ
位置情報(cM)
リンケージマップ	Classical linkage map
文献
Munsif Ali Shad, Wang Y., Zhang H., Zhai S., Shalmani A., Li Y. The Crop Journal 2023 11 345-360 Genetic analysis of GEFs and GDIs in rice reveals the roles of OsGEF5, OsGDI1, and OsGEF3 in the regulation of grain size and plant height
Lin Y., Zhu Y., Cui Y., Qian H., Yuan Q., Chen R., Lin Y., Chen J., Zhou X., Shi C., He H., Hu T., Gu C., Yu X., Zhu X., Wang Y., Qian Q., Zhang C., Wang F., Shang L. J Integr Plant Biol 2023 Identification of natural allelic variation in TTL1 controlling thermotolerance and grain size by a rice super pan-genome.
Wang Y., Lv Y., Yu H., Hu P., Wen Y., Wang J., Tan Y., Wu H., Zhu L., Wu K., Chai B., Liu J., Zeng D., Zhang G., Zhu L., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Li Q., Guo L., Xiong G., Qian Q., Hu J. Plant Commun 2023 100673 GR5 acts in the G protein pathway to regulate grain size in rice.
Gu Z., Gong J., Zhu Z., Li Z., Feng Q., Wang C., Zhao Y., Zhan Q., Zhou C., Wang A., Huang T., Zhang L., Tian Q., Fan D., Lu Y., Zhao Q., Huang X., Yang S., Han B. Nat. Genet. 2023 55(10) 1745-1756 Structure and function of rice hybrid genomes reveal genetic basis and optimal performance of heterosis.
Shen Y., Yang G., Miao X., Shi Z. Rice (N Y) 2023 16(1) 30 OsmiR159 Modulate BPH Resistance Through Regulating G-Protein γ Subunit GS3 Gene in Rice.
Li Y., Wang W., Hu C., Yang S., Ma C., Wu J., Wang Y., Xu Z., Li L., Huang Z., Zhu J., Jia X., Ye X., Yang Z., Sun Y., Liu H., Chen R. Int J Mol Sci 2023 24(12) Ectopic Expression of a Maize Gene <i>ZmDUF1645</i> in Rice Increases Grain Length and Yield, but Reduces Drought Stress Tolerance.
Ferrero-Serrano Á., Chakravorty D., Kirven K.J., Assmann S.M. bioRxiv 2023 Oryza CLIMtools: An Online Portal for Investigating Genome-Environment Associations in Rice.
Kan Y., Mu X.R., Zhang H., Gao J., Shan J.X., Ye W.W., Lin H.X. Nat Plants 2022 8(1) 53-67 TT2 controls rice thermotolerance through SCT1-dependent alteration of wax biosynthesis.
Wang D., Wang J., Sun W., Qiu X., Yuan Z., Yu S. Plants (Basel) 2022 11(11) Verifying the Breeding Value of A Rare Haplotype of <i>Chalk7, GS3,</i> and <i>Chalk5</i> to Improve Grain Appearance Quality in Rice.
Liu M., Fan F., He S., Guo Y., Chen G., Li N., Li N., Yuan H., Si F., Yang F., Li S. Rice (N Y) 2022 15(1) 17 Creation of Elite Rice with High-Yield, Superior-Quality and High Resistance to Brown Planthopper Based on Molecular Design.
Yuan H., Gao P., Hu X., Yuan M., Xu Z., Jin M., Song W., Zhan S., Zhu X., Tu B., Li T., Wang Y., Ma B., Qin P., Chen W., Li S. Theor. Appl. Genet. 2022 135(1) 51-64 Fine mapping and candidate gene analysis of qGSN5, a novel quantitative trait locus coordinating grain size and grain number in rice.
Cui Y., Jiang N., Xu Z., Xu Q. BMC Plant Biol. 2020 20(1) 90 Heterotrimeric G protein are involved in the regulation of multiple agronomic traits and stress tolerance in rice.
Li P., Li H., Liu Z., Zhuang Y., Wei M., Gu Y., Liu Y., Sun X., Tang Y., Yue L., Lu L., Luo D., Huang W., Tu S., Wang S. Rice (N Y) 2020 13(1) 73 Characterization of the 'Oat-like rice' Caused by a Novel Allele OsMADS1Olr Reveals Vital Importance of OsMADS1 in Regulating grain shape in Oryza sativa L.
Dang X., Yang Y., Zhang Y., Chen X., Fan Z., Liu Q., Ji J., Li D., Li Y., Fang B., Wu Z., Liu E., Hu X., Zhu S., She D., Wang H., Li Y., Chen S., Wu Y., Hong D. Plant J. 2020 104(6) 1491-1503 OsSYL2AA , an allele identified by gene-based association, increases style length in rice (Oryza sativa L.).
Kumar A., Daware A., Kumar A., Kumar V., Gopala Krishnan S., Mondal S., Patra B.C., Singh A.K., Tyagi A.K., Parida S.K., Thakur J.K. Plant J. 2020 Genome-wide analysis of polymorphisms identified domestication-associated long low-diversity region carrying important rice grain size/weight quantitative trait loci.
Ke Y., Yuan M., Liu H., Hui S., Qin X., Chen J., Zhang Q., Li X., Xiao J., Zhang Q., Wang S. Proc. Natl. Acad. Sci. U.S.A. 2020 117(7) 3867-3873 The versatile functions of OsALDH2B1 provide a genic basis for growth-defense trade-offs in rice.
Pei W., Jain A., Ai H., Liu X., Feng B., Wang X., Sun Y., Xu G., Sun S. J. Plant Physiol. 2019 232 51-60 OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.
Gao Y., Gu H., Leburu M., Li X., Wang Y., Sheng J., Fang H., Gu M., Liang G. Rice (N Y) 2019 12(1) 53 The heterotrimeric G protein beta subunit rgb1 is required for seedling formation in rice.
Zeng Y., Wen J., Zhao W., Wang Q., Huang W. Front Plant Sci 2019 10 1663 Rational Improvement of Rice Yield and cold tolerance by Editing the Three Genes <i>OsPIN5b</i>, <i>GS3</i>, and <i>OsMYB30</i> With the CRISPR-Cas9 System.
Liu Q., Han R., Wu K., Zhang J., Ye Y., Wang S., Chen J., Pan Y., Li Q., Xu X., Zhou J., Tao D., Wu Y., Fu X. Nat Commun 2018 9(1) 852 G-protein betagamma subunits determine grain size through interaction with MADS-domain transcription factors in rice.
Nishiyama A., Matsuta S., Chaya G., Itoh T., Miura K., Iwasaki Y. Int J Mol Sci 2018 19(11) Identification of Heterotrimeric G Protein gamma3 Subunit in Rice Plasma Membrane.
Zhou J., Xin X., He Y., Chen H., Li Q., Tang X., Zhong Z., Deng K., Zheng X., Akher S.A., Cai G., Qi Y., Zhang Y. Plant Cell Rep. 2018 Multiplex QTL editing of grain-related genes improves yield in elite rice varieties.
Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H. Nature 2018 557(7703) 43-49 Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Ngangkham U., Samantaray S., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L. PLoS ONE 2018 13(1) e0190684 Effect of multiple allelic combinations of genes on regulating grain size.in rice.
Sun S., Wang L., Mao H., Shao L., Li X., Xiao J., Ouyang Y., Zhang Q. Nat Commun 2018 9(1) 851 A G-protein pathway determines grain size.in rice.
Yu H., Ruan B., Wang Z., Ren D., Zhang Y., Leng Y., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Guo L., Chen W., Qian Q. Front Plant Sci 2017 8 486 Fine Mapping of a Novel defective glume 1 (dg1) Mutant, Which Affects Vegetative and Spikelet Development in Rice.
Yuan H., Fan S., Huang J., Zhan S., Wang S., Gao P., Chen W., Tu B., Ma B., Wang Y., Qin P., Li S. Rice (N Y) 2017 10(1) 25 08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice.
Cui D., Tang C., Li J., A X., Yu T., Ma X., Zhang E., Wang Y., Cao G., Xu F., Dai L., Han L., Koh H.J. PLoS ONE 2017 12(4) e0175731 Genetic structure and isolation by altitude in rice landraces of Yunnan, China revealed by nucleotide and microsatellite marker polymorphisms.
Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T. PLoS ONE 2016 11(3) e0150458 Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
Si L., Chen J., Huang X., Gong H., Luo J., Hou Q., Zhou T., Lu T., Zhu J., Shangguan Y., Chen E., Gong C., Zhao Q., Jing Y., Zhao Y., Li Y., Cui L., Fan D., Lu Y., Weng Q., Wang Y., Zhan Q., Liu K., Wei X., An K., An G., Han B. Nat. Genet. 2016 48(4) 447-56 OsSPL13 controls grain size in cultivated rice.
Xia K., Ou X., Tang H., Wang R., Wu P., Jia Y., Wei X., Xu X., Kang S.H., Kim S.K., Zhang M. New Phytol. 2015 Rice microRNA osa-miR1848 targets the obtusifoliol 14alpha-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M. Curr. Opin. Plant Biol. 2013 16(2) 213-20 Genes offering the potential for designing yield-related traits in rice.
Huang X., Zhao Y., Wei X., Li C., Wang A., Zhao Q., Li W., Guo Y., Deng L., Zhu C., Fan D., Lu Y., Weng Q., Liu K., Zhou T., Jing Y., Si L., Dong G., Huang T., Lu T., Feng Q., Qian Q., Li J., Han B. Nat. Genet. 2012 44(1) 32-9 Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.
Wang S., Wu K., Yuan Q., Liu X., Liu Z., Lin X., Zeng R., Zhu H., Dong G., Qian Q., Zhang G., Fu X. Nat. Genet. 2012 44(8) 950-4 Control of grain size, shape and quality by OsSPL16 in rice.
Li Q,Yang X,Bai G,Warburton ML,Mahuku G,Gore M,Dai J,Li J,Yan J Theor. Appl. Genet. 2010 120(4) 753-63 Cloning and characterization of a putative GS3 ortholog involved in maize kernel development.
Mao H,Sun S,Yao J,Wang C,Yu S,Xu C,Li X,Zhang Q Proc. Natl. Acad. Sci. U.S.A. 2010 107(45) 19579-84 Linking differential domain functions of the GS3 protein to natural variation of grain size in rice.
Takano-Kai,N., Jiang,H., Kubo,T., Sweeney,M., Matsumoto,T., Kanamori,H., Padhukasahasram,B., Bustamante,C., Yoshimura,A., Doi,K. and McCouch,S. Genetics 2009 182(4) 1323-34 Evolutionary history of GS3, a gene conferring grain length in rice
Fan,C., Xing,Y., Mao,H., Lu,T., Han,B., Xu,C., Li,X. and Zhang,Q. Theor. Appl. Genet. 2006 112(6) 1164-1171 GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein.
Kubo, T., N. Takano-Kai and A. Yoshimura RGN 2001 18 26-28. RFLP mapping of genes for long kernel and awn on chromosome 3 in rice.
TextPresso Search	Search textpresso for LK3 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID	GR:0061175
オントロジー
Gene Ontology	defense response to insect( GO:0002213 ) response to heat( GO:0009408 ) response to salt stress( GO:0009651 ) photoperiodism, flowering( GO:0048573 ) plasma membrane( GO:0005886 ) G-protein coupled receptor protein signaling pathway( GO:0007186 ) heterotrimeric G-protein complex( GO:0005834 ) multicellular organismal development( GO:0007275 ) signal transducer activity( GO:0004871 )
Trait Ontology	seed length( TO:0000146 ) grain size( TO:0000397 ) grain width( TO:0000402 ) grain weight( TO:0000590 ) seed size( TO:0000391 ) grain shape( TO:0002730 ) seed quality( TO:0000162 ) grain yield( TO:0000396 ) grain length( TO:0000734 ) panicle length( TO:0000040 ) plant height( TO:0000207 ) grain length to width ratio( TO:0002731 ) 1000-seed weight( TO:0000382 ) days to heading( TO:0000137 ) 1000-dehulled grain weight( TO:0000592 ) panicle number( TO:0000152 ) salt tolerance( TO:0006001 ) heat tolerance( TO:0000259 ) brown planthopper resistance( TO:0000424 )
Plant Ontology	seed( PO:0009010 ) inflorescence( PO:0009049 )
関連系統
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形質画像
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更新日
2024-01-17 14:36:28.988

Rice Database Oryzabase

遺伝子 - 詳細

詳細 - 遺伝子