Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0001
Core collection rank 1
Biological information
Species O. ridleyi
Genome HHJJ
Remarks Perennial
IRGC100877 IRGC100821 IRGC100820
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) HR
bacterial leaf blight T7133 (Reaction) M
DNA Marker DNA Marker data
Anther length(mm) 2.92
Apiculus color Green
Awn length(mm) 11
Grain weight of 20 0.16
Heading date 2001/8/5
Hull color Black
Panicle length 25.2
Panicle type 4
Pericarp color Red
Plant height 95
Presence or absence of awn Presence
Seed fertility 40.3
Shedding degree index 1
Stigma color Purple
Stem No. 52
Fiscal year 2001
Phenotype image
Original place Nonburi, Bangkok, Thailand
Acquired from H.I. Oka
Year acquired 1958/4/1
Seed stock volume more than 1000
Year multiplied 1 1977
Year multiplied 2 1978
Reference    >> Please submit your publication.
H.I. Oka
Report of study-tour to India for collection of rice, 1957
Nishikawa, T., Vaughan, D.A. Kadowaki, K.
Theor Appl Genet.  2005 110   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K-I.
Breeding Science  2013 63   246-254  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
Nosaka M, Itoh J-I, Nagato Y, Ono A, Ishiwata A, Sato Y.
PLoS Genet.  2012 8(9)   e1002953  
Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice.
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