cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121444     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0274700 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 10088020 -  10089103  ( - );   1084(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 10088020 -  10088646 ( - );   627 (bp)
Exon 2 Location 10088750 -  10089103 ( - );   354 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os12g0274700 Os12t0274700-01 216163 J023141B14 3814 LOC_Os12g17600.1 AK121444 19216 AP008218.2 255669953 BAF29578.1 113649066 NC_008405.2 297613623 NM_001073091.1 115488143 NP_001066559.1 115488144 Q0INY7 RBS1_ORYSJ
Os12g0274700 Os12t0274700-01 216163 J023141B14 3814 LOC_Os12g17600.2 AK121444 19216 AP008218.2 255669953 BAF29578.1 113649066 NC_008405.2 297613623 NM_001073091.1 115488143 NP_001066559.1 115488144 Q0INY7 RBS1_ORYSJ


Chromosome: 12 ,  position: 10,088,020 - 10,089,103 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgtgagcca gccacaaacg cccgcggata ggcgcgcgca cgccggccaa tcctaccaca 
000061 tccccggcct ccgcggctcg cgagcgccgc tgccatccga tccgctgagt tttggctatt 
000121 tatacgtacc gcgggagcct gtgtgcagag cagtgcatct caagaagtac tcgagcaaag 
000181 aaggagagag cttggtgagc tgcagagatg gccccctccg tgatggcgtc gtcggccacc 
000241 accgtcgctc ccttccaggg gctcaagtcc accgccggca tgcccgtcgc ccgccgctcc 
000301 ggcaactcca gcttcggcaa cgtcagcaat ggcggcagga tcaggtgcat gcaggtaata 
000361 acctactgac ccaacacaca ttattcttct tcttcttctt cttcttcttc ttcttcttct 
000421 tcaacattaa ccaataattc aattatcgtt tatttaggtg tggccgattg agggcatcaa 
000481 gaagttcgag accctctcct acctgccacc gctcaccgtg gaggacctcc tgaagcagat 
000541 cgagtacctg ctccgttcca agtgggtgcc ctgcctcgag ttcagcaagg tcggattcgt 
000601 ctaccgtgag aaccacagat cccccggata ctacgatggc aggtactgga ccatgtggaa 
000661 gctgcccatg ttcgggtgca ctgacgccac ccaggtgctc aaggagctcg aggaggccaa 
000721 gaaggcgtac cctgatgcat tcgtccgtat catcggcttc gacaacgtca ggcaggtgca 
000781 gctcatcagc ttcatcgcct acaagccccc gggctgcgag gagtctggtg gcaactaagc 
000841 cgtcatcgtc atatatagcc ttgtttaatt gttcatctct gattcgatga tgtctcccac 
000901 cttgtttcgt gtgttcccag tttgttcatc gtcttttgat tttaccggcc gtgctctgct 
000961 tttgtttttg tttcacctga tctctctctg acttgatgta agagtggtat ctgctacgac 
001021 tatatgttgt tgggtgaggc atatgtgaat gaaatatatg gaagctccgg ctatatatat 
001081 ttat

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AK249351 FLbaf28b03 884
more... (Total Hit Count: 4416 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ714322 whva2e08 557
more... (Total Hit Count: 14470 )
/rice/oryzabase