cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK119219     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os12g0274700 ( IRGSP 1.0 )
RAP - Chromosome No. 12
RAP - Location, Length 10088022 -  10088952  ( - );   931(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 10088022 -  10088646 ( - );   625 (bp)
Exon 2 Location 10088750 -  10088952 ( - );   203 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXpro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os12g0274700 Os12t0274700-01 114402 001046F11 3814 LOC_Os12g17600.1 AK119219 38656 AK119219.1 37988842 BAG99587.1 215767359 NC_008405.2 297613623 NM_001073091.1 115488143 NP_001066559.1 115488144 Q0INY7 RBS1_ORYSJ
Os12g0274700 Os12t0274700-01 114402 001046F11 3814 LOC_Os12g17600.2 AK119219 38656 AK119219.1 37988842 BAG99587.1 215767359 NC_008405.2 297613623 NM_001073091.1 115488143 NP_001066559.1 115488144 Q0INY7 RBS1_ORYSJ


Chromosome: 12 ,  position: 10,088,022 - 10,088,952 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agtgcatctc aagaagtact cgagcaaaga aggagagagc ttggtgagct gcagagatgg 
000061 ccccctccgt gatggcgtcg tcggccacca ccgtcgctcc cttccagggg ctcaagtcca 
000121 ccgccggcat gcccgtcgcc cgccgctccg gcaactccag cttcggcaac gtcagcaatg 
000181 gcggcaggat caggtgcatg caggtaataa cctactgacc caacacacat tattcttctt 
000241 cttcttcttc ttcttcttct tcttcttctt caacattaac caataattca attatcgttt 
000301 atttaggtgt ggccgattga gggcatcaag aagttcgaga ccctctccta cctgccaccg 
000361 ctcaccgtgg aggacctcct gaagcagatc gagtacctgc tccgttccaa gtgggtgccc 
000421 tgcctcgagt tcagcaaggt cggattcgtc taccgtgaga accacagatc ccccggatac 
000481 tacgatggca ggtactggac catgtggaag ctgcccatgt tcgggtgcac tgacgccacc 
000541 caggtgctca aggagctcga ggaggccaag aaggcgtacc ctgatgcatt cgtccgtatc 
000601 atcggcttcg acaacgtcag gcaggtgcag ctcatcagct tcatcgccta caagcccccg 
000661 ggctgcgagg agtctggtgg caactaagcc gtcatcgtca tatatagcct tgtttaattg 
000721 ttcatctctg attcgatgat gtctcccacc ttgtttcgtg tgttcccagt ttgttcatcg 
000781 tcttttgatt ttaccggccg tgctctgctt ttgtttttgt ttcacctgat ctctctctga 
000841 cttgatgtaa gagtggtatc tgctacgact atatgttgtt gggtgaggca tatgtgaatg 
000901 aaatatatgg aagctccggc tatatatatt t

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Barley ESTs
Acc. No. Clone Name Length
AK249351 FLbaf28b03 884
more... (Total Hit Count: 4416 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ714322 whva2e08 557
more... (Total Hit Count: 14470 )
/rice/oryzabase