cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK111743     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os06g0275500 ( IRGSP 1.0 )
RAP - Chromosome No. 6
RAP - Location, Length 9352714 -  9361033  ( + ) ;   8320(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 9352714 -  9353028 ( + ) ;   315 (bp)
Exon 2 Location 9353129 -  9353232 ( + ) ;   104 (bp)
Exon 3 Location 9353341 -  9353660 ( + ) ;   320 (bp)
Exon 4 Location 9354451 -  9354612 ( + ) ;   162 (bp)
Exon 5 Location 9355335 -  9355419 ( + ) ;   85 (bp)
Exon 6 Location 9355536 -  9355685 ( + ) ;   150 (bp)
Exon 7 Location 9355772 -  9355819 ( + ) ;   48 (bp)
Exon 8 Location 9355889 -  9355957 ( + ) ;   69 (bp)
Exon 9 Location 9356081 -  9356784 ( + ) ;   704 (bp)
Exon 10 Location 9357610 -  9357745 ( + ) ;   136 (bp)
Exon 11 Location 9357820 -  9358040 ( + ) ;   221 (bp)
Exon 12 Location 9358539 -  9358670 ( + ) ;   132 (bp)
Exon 13 Location 9359500 -  9359590 ( + ) ;   91 (bp)
Exon 14 Location 9360062 -  9360109 ( + ) ;   48 (bp)
Exon 15 Location 9360188 -  9360316 ( + ) ;   129 (bp)
Exon 16 Location 9360541 -  9361033 ( + ) ;   493 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXpro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os06g0275500 Os06t0275500-01 J023052J10 206084 J023052J10 5466 LOC_Os06g16390.1 AK111743 6177 AP008212.2 255676632 BAF19293.1 113595419 NC_008399.2 297606578 NM_001063914.1 115467559 NP_001057379.1 115467560


Chromosome: 6 ,  position: 9,352,714 - 9,361,033 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 cttccctttc ctccacccac gccgcgacga cgagtcgccg ccgcggcctc gccggcgacc 
000061 aggtctccgg cggccccgcc gcccgccgtg acggggctcc ggccttccgc cctcctcccc 
000121 gcaccgcccg ctatctcggc tccccgactc ctgcattccc ccgactctcc cccggccgcc 
000181 gccgccgcca tttctgactc tttctccgcg gcgcgtctct cctccgagag cacgccgacc 
000241 gcctcccgaa gcggcgtcgc ggccgcggcg gccgccgcct tctcccgccc ctgatggctg 
000301 gcgattcccg aaatgaggcg ggttctttct cctttgcctt tttttactgc tcggatgaaa 
000361 tttgaatctg tgtatgcttg tggttgtgat gaaatttagc ttgttctgtc cccgcagccg 
000421 atgttttgcg aggaagggag cagtgaatcg ggctatgttc tatgtgttat tgattcgctg 
000481 aagaagaaaa tcacatcgga ccgctttgtt tacatccagg tgatttgatt tgatttgatt 
000541 gtttggagct gcaaatctcg gtcattttct tgtattttct ttatttacca gctgattagt 
000601 tttgttcccc gtgatctttt tttccagaaa agggtagagg agaatagcat taagcttagc 
000661 ccgattacac tgcactctca caatttgtca aaaaataggc aaactagtac atccaacagt 
000721 acagatttag tctcgaattt gctcacaaag aggaaagaag atgccctgtg tgctgtgaat 
000781 agtcgtgagt catctcctga tgaaagtgaa ggtgccaatt gccaagatga gtgttcatcg 
000841 actgttattg tgggtggaaa tctatccgcg aggaattctg tccgtccgat tagactacca 
000901 gaagtggcaa cactccctcc atatacaact tggatatttt tggacaggtg cattttcttg 
000961 acatccctaa gatccctgct taaattacat agttatcatg gaaagttata gcgtatacac 
001021 tttattatcc attagcaaca acatagcaat actatttcat ttctcttgct aaacagtaaa 
001081 cacacgctca tttgtggtct ttagtttttt gtgcaacaat ctattcagtc aaacatagtt 
001141 tttccgacct aatgctttat gtctctggtg attttttttc tcttcatgtg taaatgtgta 
001201 atggagatat tgcctttcgt tcttactata agcttgggaa atggtatagt ataaaaatgg 
001261 aacaagtcct tatgcggccc cttgctacgt gccccacctc tctcttaatc acatgcagtt 
001321 gcagacttgc aggctgggag tgtgtgttaa aacaagagca gcaaatgcca cattgactgc 
001381 cttgaattca tcttcttggc tttggtagca aagctattgt gccagaacca ttggctttgc 
001441 ctgctgcagt gtttcttttg cttttgctgt ttcatccgct ttatgcttct tagtgttctc 
001501 tttgctattg cgtgattttg tggagcagca agcaaaaaat cagactgaaa catgtttttg 
001561 atgaattgtt tgttgatatg aatttaacag tatatctcat atgacaaact tctatttttc 
001621 taaataagta atgcaaaaca tgcatggtca cagttacaat ccagcatact tttagtttgg 
001681 agaggtaggg catcttaagg tttgttgaaa tataagattt tacaatcttt cgtgcaggaa 
001741 ccagcggatg caagaagacc aatctgtact tggtcgtcga aggatttact atgatacaaa 
001801 ctgtggcgaa gctttaattt gcagtgatag tgaagatgaa gctgttgagg acgaggaaga 
001861 gaaaaaggag ttcaaggatt ctgaagattg cataattcgg taaatatgct ttggacatgc 
001921 atttgttttc ttttgccttg aacattcact aaggatgctc aacttgtttg accgttacag 
001981 gctcatggga ccaagataca ggtgcagtta ccatagcacc tggagcttgg gctcagtcca 
002041 tagaataaca gatctgatga ctctgtagta atagtttcat ggagaaatgc tttcttctgt 
002101 aagcattttg tcatattctc tgtttttctt ttgactggga aaactaccag gactttgcct 
002161 agtagtgtaa tttcattaaa gaataaaaaa tagtaatatt ctctttttga agtcacaata 
002221 taacatagta cagaagcaat agagaaatga tattaaatat actggtcaag taacatttgg 
002281 tatgaaatat tcccaagaga ttatttagta aaactacatt attaaaaact tgtaagaaaa 
002341 agggtttggt tttggggcat atgtcttata tcattaaatg aaatggtcat taccagtttt 
002401 atctacattg ttccagggga aaaccttgag ctggtcacac tgcatatttg acctggtttt 
002461 gttttgtgca acccttgcac aagcaagaaa agtatggtta cagcattaat ctgagttgtt 
002521 tgtggattaa tttagacctt aaacatcata gatcacaata atttggtttc tcctgtatgg 
002581 aattcttcca cttaagggtg attttgtgca atgattgcca ggatgaccat tcaagaatgt 
002641 ggcatgtctg atgctgtgct tgaaactcta gctcgagata tcgaaagggc tcctgatgat 
002701 ataaaggttc atacaacatt tattcaatct cacgtcacat ttgcatttga tccatttggg 
002761 attttcctct tccaacttat tgtttcattt ctgaaaaatt aaattacgtg tctattttcc 
002821 aggccaggta tgagatccta caaggggaga aacctgaggg ttcttccaag aaagtgtctg 
002881 aacttaatgt caaaatggaa gacgtgtacg gtgataaaga tctggatgca gcattggatt 
002941 cctttgacaa tctcttttgt cgccgatgtt tggtacgttt tctgttaatt gtcatgtgtg 
003001 ttttacataa tatctctggt ttactgatga aacattctgc tcattttgat gttggaaggt 
003061 ttttgattgc aagctacatg ggtgttctca agatttagta tttccggtaa ttttcaaacc 
003121 aatgagttat ttcctaaact tgtgtgttgt tctaattagt gtccttttcg tatagactga 
003181 aaagcaggca ccattgtgca gctcggatga gggtacacca tgtggtattc actgttacaa 
003241 actggtctgt attttatagg catatgactg tggaaaagca gctcttcttt tatgatgatt 
003301 tagatatccg aaacataagc atatgccgtt ttgctgatct ttacctcatt tataatcttt 
003361 ttgtcaggtc tctaaaccag atgctatcat ggagattgat tctcatttgc ttgttgatgt 
003421 tgaggagcca acatcggaca atctaaagga tcagataggg tcaaataaga aaaagcttgg 
003481 ttctagtggg cagaaaacaa aatctcaaca aagtgaaagt tcttcaactg caagggtttc 
003541 ctcagaaagc agtgagtctg aagtacaact gttaagcaat aaatccccgc aacactctcc 
003601 tggcctctca aaaaataagc ttggcgcaaa aggtggaatc aagaaaagta ctaacagaag 
003661 aattgctgag agaattctaa tgagtgtgaa aaaggggcaa caggaaatgt caccggactc 
003721 taattctatt gttaatggat gccattggcc tagggatatg aagcttagat ctgatactag 
003781 gagtggaatt aaggattctg ttgtatcctc acagtgtaat tctccaagca caaggagttt 
003841 tagaaagaag ggcacacttc aaatggagaa taactcatct tttgtggatg ctcagagtga 
003901 ttcaatggag gatacaaata atgaacattc agcaacagat ggttgtgata gttcaaggaa 
003961 agaggaatgt gttgatgaga gtatatgcag gcaagaagct catggcaggt cctggaaagt 
004021 gattgagcaa gggcttctat tgaaaggatt agagattttt ggaaagaaca ggttggtccc 
004081 ttgaaatgat cagcttcata tgaattattt cactaccttc tacttcatct taatatttgt 
004141 atactattgc acaactaact gctgtatctg ttcaggacag agtaaacgtt aatgtgtcta 
004201 atccctccgt cccaaaatat aaggcgtgct ttgactttta attgtcaatt tctcacaagt 
004261 atactgtcta tactctatag tggaaccaac atcatatgaa agtacattca aatatgaatc 
004321 tgacaatacc atttttatat cactaaacct atatattgtc agactagttg tgagtcaaga 
004381 tttgtaaaat ttgaatttta aaatgcgtgc acaccttata ttttggggtg gagggattaa 
004441 cctttcagtt cagcacaaga aactgactat gctttctttt aatatatctg tattactaaa 
004501 agtattcaac acaaatgtct atatttaaag caaatgctct tgcatcataa ttagacatcc 
004561 ccgaaactat attcttatac tactacattt caagtaaaag ctgtaacatg aagatacaat 
004621 ctacaatttg tcatgcataa cgtattggaa tgcggaatta actggaattt ctaatgtttg 
004681 catcatttag tatctagttg tgttagttat agcgtttcat gtacaagaaa ttctgatgta 
004741 tgttcatttc aaatgcctta aaaactcatt cctgttttct ttggatgtct tgcaagcata 
004801 ttggaaatgt tctttatcct ttctataatg agtagaatac cttgttttcc ctaatttgaa 
004861 tagtcatact gagcccttgt ttttcctatg ttgaagttgt ttaattgctc ggaaccttct 
004921 gggtgggatg aaaacatgca cagatgtttt tcagtatatg aattacattg aaaacagcag 
004981 tgcatctgga gctcttagtg gtgttgattc tcttgttaaa ggatatatga aggtaggatt 
005041 catcataaag ctcatttact tgtattttcc caaggtttca tcttacttta atgcttgaac 
005101 tcccagggta atgaattacg gacaagatca agatttgtga gaaggcgagg aagggtccgc 
005161 cgtttgaagt acacctggaa aactgcaggc taccatttta taaggaaaag gattacagaa 
005221 aggaaggatc agccttgtcg acaatacact ccttgtggtt gccagtctgc atgtgggaag 
005281 caatgtccat gtctcacaaa tggtacctgc tgtgagaaat actgtgggtg agctacttca 
005341 attattcata ttgcagactc cgagaacatt ttttcttcta gatattaata atgttgctta 
005401 tgaaaacaaa actgtgtaga tgtatacaat ttcaatattg tttggttagt gccgaccaat 
005461 tatgtcgtat gatcacatct tagttttgca atcattgctg cttactgaaa aggaaaggaa 
005521 aataaaacct aggaggaact aggcaccctt tcaattaaga ggaaaacagg caccaaattt 
005581 ctagttgaag aggacttgaa ccttgatggt gggagagtga gggtgtaaac tccgcatttc 
005641 tcacccaaat ggtgaatcaa acacatgctt ctcttttgtt ctgtgtgctc ttttggctat 
005701 tagctattac ttattttgat aatttataat tttaattgga ataaatgatg caaacacatg 
005761 gagtgcaaat gtttgctgtc cgcatcctgc tgatgcaagt tgaagtaatc ctttctgcgt 
005821 tgcaggtgcc cgaaaatgtg caagaatcgc ttccgaggtt gccattgcgc aaagagtcag 
005881 tgtcgcagcc ggcagtgtcc atgctttgct gctgacaggg aatgtgatcc tgatgtgtgt 
005941 agaaactgct gggtagggta tgtattttaa attctgatga ccctttgaat gattttgcta 
006001 gttaatgcac atttgtatat cttagagaaa ggcaccaact ataatgtgct tttcattctt 
006061 tgcacttctc caaccttaca tctaccttga aagttgagaa attaccacct atgcctgcac 
006121 ttgaaggatg gaattttgat ggatgatgga tttatcctta agtgcaggaa gaatcttgca 
006181 tatgtatatt ccagtatctg aagatacgga gttctgcagt aaaatatctt aatggtagaa 
006241 ttgaatttaa ttaatataat catatcaatt gcttgcccaa cagtcccaat aggcaatagc 
006301 tacattccac aattaaaaaa atggtgcaat aataataatt tgacatttcc ttctcatacc 
006361 atttgctagc atacttgata gtgtgtgcca gcacattgac aattgatatt ctatatctaa 
006421 attatttata acaatatctg agttttatag gagtgtttac caggagttaa tccatgaaaa 
006481 atgtatcaat gatgggggag tttaatttga atttgttatg aacgagcttc taatggtagg 
006541 aaatgaaatt ttagatactg taagttgtta ggcaaacacc aaagatgagt atattatccg 
006601 gccagtgtgt aaatccaatc atgatccttt ttcactccat ggaaccttaa atatgctttc 
006661 tgttattcat tgttgaaata gtctgttatt caatttcaat tactgtttct tcatccctaa 
006721 tttttctaga acaaagcgcc agtacattga acttctattt ttctacctgt actttctatt 
006781 gtgcaggtgc ggtgatggta cattgggagt ccctaaccaa agaggtgata attatgaatg 
006841 ccggaacatg aaactgctgc ttaaacagca acaaagggta aaccttttgc actttgattt 
006901 attcatgcta ttgcaccttg gttataattt cgtcaagcct atcgattttt tatgcctgct 
006961 tggcccttcc atttgccttt attcgatgct ttgatatttt tgtgtgagga ggcttgaggt 
007021 ctaagttaat tacccagcag tacttctcaa tagttttatt cttttttttt aatatttttc 
007081 acgtgagttc aaattccagt tgtctaaata caaaagatct taagtttaat accaaagaaa 
007141 ctagttagag taactatatt ccaaaacagg caatgaacta tgaaccaaaa aacttcccat 
007201 tagcaggaaa ataattgcat aaagtatcta tcgattatgt tggtgaattt atgaaacacc 
007261 agggggtgtt acttcatttt ctattacagg tcctattcca tctctaaata tctgtaaata 
007321 gtattgactt gctatgtgca ctcttcaggt cttacttggg agatctgatg tttctggctg 
007381 gggagctttc ctcaaggtaa gatttctcta ttgacccttt tcctccctca taggacgtac 
007441 cctcatctaa ctagtccttt tcctaaatct tcagaatagt gttgggaagc acgagtatct 
007501 tggcgagtac actggggagc ttatctccca taaagaagct gacaagcgtg gaaagatata 
007561 tgaccgtgag aattcatcgt tccttttcaa cttgaacaat gaggtgagtg caaagacacc 
007621 ccgcaaatta cggtctgcaa gcattcagga ttgcatactg tactgatttg actagcctaa 
007681 tgtcatcctt ttgcgtgaac cgagttgttt acatccccaa cccactgttg ttcaatatcg 
007741 cgcgatttat gatccgctgc agtgttttcg ctgttttcgc cagtaccgga tgctcactca 
007801 ctcactttac cctctcgatg aatgcagtac gttcttgatg cctacagaat gggcgacaag 
007861 ctgaagttcg ccaaccattc ccctgatcca aactgctacg ccaaggtcat catggtagca 
007921 ggcgatcaca gggtggggat cttcgccaaa gagcggatca gcgcgggcga ggagctgttc 
007981 tacgactacc gctacgagcc cgaccgggcc ccggcgtggg ctcgcaagcc cgaggggccc 
008041 ggtgccaagg acgacgccca gccttccacc gggagagcaa agaagctcgc ccactgaaga 
008101 agaagaagaa gaagaagatc agccgttgat tcttttgttg tcttggttga ttctttcgtt 
008161 attggtgagg gggaccgaga actctgacgg tgattagcgc cgtaaggaaa actttcctgc 
008221 cattcgttgg ccccctcgat tcgattcgtt gattttccct gaattctgta actgctgcac 
008281 ctgtcgccag ttcaacttca aaagattttt ctgattctgg 

相同な Wheat 及び Barley の EST データはBLAST 結果の E-value が e-20 以下のものです。

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ626543 rwhvs8c17 800
more... (Total Hit Count: 2 )
/rice/oryzabase