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BLAST
Query Form
BLAST with BLASTScope
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query[translated into protein] vs. DNA database[translated into protein])
tblastn (Protein query vs. DNA database[translated into protein])
Database :
IRGSP Build5 all chromosomes ( DNA ) [ 12 sequences ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 01 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 02 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 03 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 04 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 05 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 06 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 07 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 08 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 09 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 10 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 11 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build5 chromosome 12 ( DNA ) [ 1 sequence ] ( 2008.12.25 updated)
IRGSP Build4 all chromosomes ( DNA ) [ 12 sequences ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 01 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 02 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 03 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 04 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 05 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 06 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 07 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 08 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 09 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 10 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 11 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
IRGSP Build4 chromosome 12 ( DNA ) [ 1 sequence ] ( 2005.08.31 updated)
Rice all chromosomes ( DNA ) [ 12 sequences ] ( 2005.08.13 updated)
Rice chromosome 01 : AP008207 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 02 : AP008208 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 03 : AP008209 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 04 : AP008210 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 05 : AP008211 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 06 : AP008212 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 07 : AP008213 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 08 : AP008214 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 09 : AP008215 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 10 : AP008216 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 11 : AP008217 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Rice chromosome 12 : AP008218 ( DNA ) [ 1 sequence ] ( 2005.08.13 updated)
Please specify the sequence data to reference.
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The following options will be set up if necessary.
Options for BLAST Search
Filter
ON
OFF
Expect
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options
:
Options for BLASTScope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits
Limit :
Hits
Number of HSPs :
All HSPs
Limit :
HSPs
Limit results by alignment length :
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Limit results by range of query sequence :
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