Strains

cDNA/BAC/Fosmid

Plasmid for Knock-in Experiments

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Medaka Tools

Medaka Strain
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Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

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From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

CLSTR04304     VD

Merge cluster information
Name CLSTR04304
Library ALL 292 cDNA [Download: FASTA]
olea 5 cDNA [Download: FASTA]
rolea28p18  rolea37o11  rolea49o07  rolea54b13  rolea7k05 
oleb 5 cDNA [Download: FASTA]
roleb12p15  roleb23f04  roleb25e24  roleb35o11  roleb65b01 
olec 0 cDNA
olvl 0 cDNA
olli 10 cDNA [Download: FASTA]
rolli18f22  rolli18l02  rolli22a01  rolli25e02  rolli30m05  rolli31o08  rolli3j23  rolli47h16  rolli56f22  rolli61h11 
olbr 6 cDNA [Download: FASTA]
rolbr20b13  rolbr25g07  rolbr33a07  rolbr34j10  rolbr48b13  rolbr8e18 
olgi 64 cDNA [Download: FASTA]
rolgi11e11  rolgi11h05  rolgi11i19  rolgi12l11  rolgi13d13  rolgi13h05  rolgi15d23  rolgi15g12  rolgi15j11  rolgi15p18  rolgi16e20  rolgi16o13  rolgi17m11  rolgi1o07  rolgi1p24  rolgi20f15  rolgi20p04  rolgi23a12  rolgi23g13  rolgi24l13  rolgi24m23  rolgi26g22  rolgi26i01  rolgi26n23  rolgi27m13  rolgi30l09  rolgi32m08  rolgi35g05  rolgi36d03  rolgi37o22  rolgi38d01  rolgi38g05  rolgi39b05  rolgi39b13  rolgi41o11  rolgi41p07  rolgi43c19  rolgi43e09  rolgi43h16  rolgi46i01  rolgi47d08  rolgi49o16  rolgi4e04  rolgi4e13  rolgi4j23  rolgi50l04  rolgi52c17  rolgi54h11  rolgi57l01  rolgi58p21  rolgi59f13  rolgi59o23  rolgi60i14  rolgi61i12  rolgi61l21  rolgi62d08  rolgi62e14  rolgi62i06  rolgi62i12  rolgi64n05  rolgi65m15  rolgi7g06  rolgi7m01  rolgi8l09 
olki 73 cDNA [Download: FASTA]
rolki10b16  rolki10c19  rolki10d12  rolki11i02  rolki12m01  rolki13a15  rolki13e15  rolki13p14  rolki14p08  rolki15m10  rolki16a05  rolki16h13  rolki16o12  rolki17o06  rolki19j08  rolki1b06  rolki1g03  rolki20b19  rolki20g07  rolki21d07  rolki23k02  rolki24b11  rolki24o15  rolki26c11  rolki26f09  rolki26o06  rolki27o17  rolki27o23  rolki28a01  rolki28i01  rolki29k22  rolki29p15  rolki2e01  rolki2j05  rolki30f17  rolki30i16  rolki33m07  rolki35j22  rolki36l24  rolki36n03  rolki38a21  rolki38p18  rolki39m23  rolki3m15  rolki40b20  rolki42g17  rolki43m04  rolki44a03  rolki46h10  rolki46k15  rolki48m18  rolki50c07  rolki51e14  rolki52p17  rolki53i09  rolki54i01  rolki55b09  rolki57a09  rolki57a18  rolki57j23  rolki57m09  rolki58d06  rolki59l02  rolki59l07  rolki5d09  rolki61b07  rolki62l04  rolki63l06  rolki64c20  rolki64j17  rolki6c01  rolki6i21  rolki8o21 
olsp 122 cDNA [Download: FASTA]
rolsp10b03  rolsp10f20  rolsp11b21  rolsp11j16  rolsp11m07  rolsp12j19  rolsp12l22  rolsp13b19  rolsp13j17  rolsp14i24  rolsp14j20  rolsp15a18  rolsp15b17  rolsp17h22  rolsp17i15  rolsp17p05  rolsp18e19  rolsp18m01  rolsp19i09  rolsp1d23  rolsp1h21  rolsp20l11  rolsp20n04  rolsp21e13  rolsp21e24  rolsp22g13  rolsp24f04  rolsp25b23  rolsp26e11  rolsp26i06  rolsp26j07  rolsp26k10  rolsp26m08  rolsp27a24  rolsp27b06  rolsp27b14  rolsp27c07  rolsp27h01  rolsp27i08  rolsp28e12  rolsp29c14  rolsp29i06  rolsp29p23  rolsp2f12  rolsp30c19  rolsp30i03  rolsp31c01  rolsp31o06  rolsp32g05  rolsp32i15  rolsp32j03  rolsp32n23  rolsp33g16  rolsp33l14  rolsp33n01  rolsp34h14  rolsp34p04  rolsp35d10  rolsp36o15  rolsp38a02  rolsp38c24  rolsp39a06  rolsp39b21  rolsp3c08  rolsp40a08  rolsp40k05  rolsp41a15  rolsp41b20  rolsp41i19  rolsp41j14  rolsp41o02  rolsp42h03  rolsp42p24  rolsp43g21  rolsp43i19  rolsp44b17  rolsp44e10  rolsp44k17  rolsp46f21  rolsp46h23  rolsp46j06  rolsp46l24  rolsp47j03  rolsp47n22  rolsp48b20  rolsp48b21  rolsp48c05  rolsp49l04  rolsp4b05  rolsp4i01  rolsp4l13  rolsp4n23  rolsp4o21  rolsp50k03  rolsp51m15  rolsp52i16  rolsp52i24  rolsp52j17  rolsp53a18  rolsp53k16  rolsp53n23  rolsp53o07  rolsp54h02  rolsp54p20  rolsp57c23  rolsp58j10  rolsp59a16  rolsp5d02  rolsp60n17  rolsp61e15  rolsp64k17  rolsp65e23  rolsp65g24  rolsp7a07  rolsp7a15  rolsp7m19  rolsp8c07  rolsp8l21  rolsp9a13  rolsp9b15  rolsp9j20  rolsp9n14 
olte 3 cDNA [Download: FASTA]
rolte1a02  rolte28i23  rolte50k14 
olova 4 cDNA [Download: FASTA]
rolova18m19  rolova1g24  rolova4a16  rolova51j23 

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/


Contig information - 1
Name Contig1
Clone count 1 clones
Length 810
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit MHC class II antigen [Oryzias latipes]
Score 550
Evalue 2.12149e-54
Detail
Sequence [Download: FASTA]
>Contig1
TACCCTTCTGCCATCCTAGGTACTTTAACATTGGGAGTTGGGTCATCTAGACCCACTAGACAGAG
CTCTGAACCTTTTTTCTTCAATGATTTGTGATCTTCACTGGTGTCCATGGATTACATGAAATCTT
TCCACCTTTATCCACCTTTGTCATGGTAGGGAGAACACCTCAATGGAAGGGGGGGGTCATCTGGA
CCCCATAGGATAGCACAAGGGTTAAAGATATGAAGAACAGCAGAGAATCATCCAGACCACAACAC
CTGATTAAAGAAAATAATGACAGACTGGATCCAGAACCACAGTCCTCCCACAGAACCCAGAAAGA
AGTGAGATGTTCTGGATCAGGTTCTACTGGGTCCACAAGTGGACCCATCTGTCTGCAGGAACAGA
AGAACCTCAGCTGCTGGGAACCAGAATACGACCTGAAACCAGAACCACAGACACTCAGGAACCCA
CTATGGACAGAACCAGACTGGACCGGTTTGAACTGGACCCACCTCTGGCCTTCCTCTTGTAGTAG
ATGAATCCAGCCAGAGACAAGACCAGACCCAGAATCAGCCCAGAAGCCCCGATGGCCACTTTGTT
CCTCTCTGACTCTGGCATGGACGGGTCCCACTCTGTGACCAGAGGATCCTTCAGGCTGGCGTGTT
CCACCTTACAGGAGATTTTCTCTCCAGACCTGGGCGTGTACTCCAGGTGGGAGTGGATCTGGTAG
TACCAGTCCCCATCCTCCATCTCAGCGGTGGAGGTGACGTCAGAGGAGACCTCCTCCTTGCCTCG
GAGCCAGCTGACCCTGATGGTCTTGGGGTA

Contig information - 2
Name Contig3
Clone count 2 clones
Length 922
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit hypothetical protein [Paramecium tetraurelia strain d4-2]
Score 82
Evalue 4.8931
Detail
Sequence [Download: FASTA]
>Contig3
ATATTACAACAACGGTTGTCTCAATGGGCTCCATACCGGTAATTGTGTAGTCCTTGTTCTATCCT
AGGCACTTTAACGTTGGGAGTTGGGTCATTTAGACCCACTAGACAGTGCTCTGAACCTTTTTTCT
TCAATGATTTGTGATCTTCACTGGTGTCCATGGATTCCATGAAATCTTTCCACCTTTATCCACCT
TTGTCATGGTAGGGAGAACACGTCAATGTAAGGGTGGGGTCATAGGACAGCACAAGGGTTAAACA
CACTAAGCTAAACTGGGTATCCCTGCCCTTAGACCCTCCTTGTCGGTAAGGAAAAACTCCTTAAA
AAACAGGAAAAAAAATAGGAAACCTCAGGGGTGTCCACATGAAGGAGGGATTTTAGAGAAAAATT
AGCTCATCTAACTTAACTAAAATTCTACTCCAAGGTGCAAAACAGCCACAGATTTGCAAAACATT
ACACTCAGTGATTTGTGAAACTAAAAGAATAATTATGTGGAATCAGAAGATAAACAATGATACAA
CATCCGATCTCAATCGAGTCATCAAACCACGTGATCGGGACCGATTTCCGATCATGTGATCAGAT
TGGGACATCCCTAATAAAAACCTCCAAAAACAATACAGATTGAGAACAAAGAAGGATTTTGACAT
TGTAAAAGTAAACTTAAAATCATGTTGGTTTTTTTGTCTTCATCAGGATCTTCAAGTATGATCTC
AAAATATCAGCTTCTGCAGAAATCCCAAAGAAATGACCCAAAGGAAAGGAAAGGAAACGAGTTCA
GCAGAAACTTGCTGTTCGTATGAAAAAGAATAATAAACATCAGAGGAGTTCCATGACGTTCAGTT
GGACATAAAACTACTGAATGAGAAGCCAGGGTTCATTTTGAACTGGACATGCTGATCCACTGTTT
CAAACTCATTCA

Contig information - 3
Name Contig4
Clone count 5 clones
Length 884
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit unnamed protein product [Tetraodon nigroviridis]
Score 677
Evalue 4.63345e-69
Detail
Sequence [Download: FASTA]
>Contig4
AAGTCGACACTGAAGAATTGAAACGATGAAAGAAATTATCAAACTCTCATACAACACGCTGGTGA
ATTCTGAGTTTAAAAAGTTGGAAGGAAGGACGTAGAAAGGAATTTAATTCATGAAGTCAAACTCT
GAAGGTTCACTTTATGAACATTTTCTTGCTGTAACCCTTAACATTGGGAGTTGGGTCATCTAGAC
CCACTAGACAGTGCTCTGAACCTTTTTTCTTCAATGATTTGTGATCTTCACTGGTGTCCATGGAT
TACATGAAATCTTTCCACCTTTATCCACCTTTGTCATGGTAGGAAGAGCACGTCAATGTGAGGGT
GGGGTCATCTGGACCCCATAGGATAAGGGTTAAAAATGAGAAGATTTCCAGGAGTTTACAAAAAT
AGTTCTCTCAAGATTTCCCACAATGCACCGTGGCAGTGTCCAGAAAGCGAATGTGCATCCTGGAC
TCCATCTCCAGGCCCTTTAAAATCTGCTCGAAATGCTCAAACGTGATTCCTTCATAGAAGTCCTC
CGGACCCATGTGGGGCACGTTGGTGCTGGCCACCTCCAGCATGGCGGCGTCCGTTATCTCTTTGG
CGGATTCCTGCTCGATGCTGCCGCTGGACAGAAGCTCCTCCACCACCTTCCTGTACTCCTCCAAA
GTTATCTTTCCATCTCCGTCTGTGTCGTGCATGTTGAACAAAAAGCGCAGTTTCTCTTTTCTCAT
TGCCTGCTTTTCCTCTGCGGTCATTTCCAGGGTTGGGGGGCGGAAGTGGGACATCACCATGAGGA
ACTGCTCGAAGGTTATCTCCTCCAGGGAACCCACTTCACTGTCATGCTGGTTCCTTTTGTCAAAG
AAGGCCTCAATAATTTGACTTTTTATTGGGTTGTAAGTC

Contig information - 4
Name Contig5
Clone count 7 clones
Length 1273
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit BKRF1 encodes EBNA-1 protein-like [Oryza sativa Japonica Group]
Score 85
Evalue 3.59448
Detail
Sequence [Download: FASTA]
>Contig5
AATAGATAACATTTATTATAGATGAGACAGTTCCAACTTTCATGACTCCACCCACTAAAGCAGGT
CCACATGTGACCTGATTCCTAAACAGCAAAGTGCTTTCTAACTGAATGCTGATATTTATGGTATT
CAATTCAATTCAATTTCATTTCATTTATATAGCCCAATATTTACAACAATAGTCGTCTCAATGGG
CTTCGTACTGGTAATTGTGTAATATACATGAATCATAAAGAACATGTAGTCATAGAATTCAATAG
CAGTTTGATAATCTAAACTAAACAGACTAAACTAACTGGACATCCCTGCCCTTAGACCCTCCTTC
TCGGTAAGGAAAAACTCCTAAAAAACCGGATTCCGGAAAAAAAAGAAGAAACCTCAGGGGTGTCC
ACATGAAGGAGGGATCCTCCCCCAGGACGGACAGGCGATGGACCAAAACTCTTAACCCTTGTGCT
ATCCTAGGCACTTTACCATTGGGAGTTGGGTCATCTAGACCCACTAGACAGAGCTCTGAAACTTT
TTTCTTCAATGATTTGTGATCTTCACTGGTGGTCGTGGTCGGGGTAACACATCAATGGTCATCTT
GACTCCATAGGATAGCACAAAGGTTCAAGAGTTCTTTTTTAGATGGAAAATTTGGAATGATCATT
TTTGCATTCAGAATAGGCATAAATCATTTTTTTAATTTATTTAAAAACAAATCTTAATTCAGTCA
GAATGTTTATTCTAAAGGGTAAAGCCAATGACATCTCCATGTTTTTAGTCCAAGAATTTAAAACC
AGGAACGTTCAGTTTACACTTTCATTTGTCTTTTTTTTTTAACATGAAATCATTTTTTTGTCGTT
GACATCTTCCAAAGGTCTTTGGCGTCTCCCGTCCCAATTTCAGAAGCCCTTGCGTTCACATAGTG
AAGACGTGGTTATGACATCACTTTAACATTAAAGTACATCCAGCAAATGTAAACCAGACAAGTGA
ATTCCATGCAGAATCCTGGATCTGCGTCATGCGTTACATCTAAGGAAGAACCAGTCGTAGTTAAA
GAGATCCAATATGGACCCAAGAAACTCCACGGTTGTGAATGTGACACAACCTGAAATTAAAAAGA
ACAAACACACACGATACGTGCACAAAATGTGCGAATCACAGCCCAGACAATGATCCTCCACTTGC
ATTTCAGAAAGACTTGATCATCTGCATAGAACTTCAAAGGCAACCTTTCAGAATAAAGCGTCGTA
TGCAGCAAAGAACTAAGTCATGCATGTGGNCCAGTTTC

Contig information - 5
Name Contig6
Clone count 18 clones
Length 861
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit MHC class II antigen [Oryzias latipes]
Score 556
Evalue 4.7232e-55
Detail
Sequence [Download: FASTA]
>Contig6
TACTTTCCAGATTACCCTTCTGCCATCCTAGGGTACTTTAACATTGGGAGTTGGGTCATCTAGAC
CCACTAGACAGAGCTCTGAACCTTTTTTCTTCAATGATTTGTGATCTTCACATGGTGTCCATGGA
TTACATGAAATCTTTCCACCTTTATCCACCTTTGTCATGGTAGGGAGAACACCTCAATGGAAGGG
GGGGGTCATCTGGACCCCATAGGATAGCACAAGGGTTAAAGATATGAAGAACAGCAGAGAATCAT
CCAGACCACAACACCTGATTAAAGAAAATAATGACAGACTGGATCCAGAACCACAGTCCTCCCAC
AGAACCCAGAAAGAAGTGAGATGTTCTGGATCAGGTTCTACTGGGTCCACAAGTGGACCCATCTG
TCTGCAGGAACAGAAGAACCTCAGCTGCTGGGAACCAGAATACGACCTCTGGCCTTCCTCTTGTA
GTAGATGAATCCAGCCAGAGACAAGACCAGACCCAGAATCAGCCCAGAAGCCCCGATGGCCACTT
TGTTCCTCTCTGACTCTGGCATGGACGGGTCTGAGGACAGACAGGTAAGAGAGACAGGTGATACA
GACAAACAAGACAGGTGAGACAGAGACAGACAGGTGAGACACACAGACAGGTGAGACAGGTATTC
ACCCCACTCTGTGACCAGAGGATCCTTCAGGCTGGCGTGTTCCACCTTACAGGAGATTTTCTCTC
CAGACCTGGGCGTGTACTCCAGGTGGGAGTGGATCTGGTAGTACCAGTCCCCATCCTCCATCTCA
GCGGTGGAGGTGACGTCAGAGGAGACCTCCTCCTTGCCTCGGAGCCAGCTGACCCTGATGGTCTT
GGGGTAGAAGTCGTAG

Contig information - 6
Name Contig7
Clone count 253 clones
Length 989
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit MHC class II antigen [Oryzias latipes]
Score 434
Evalue 8.33746e-41
Detail
Sequence [Download: FASTA]
>Contig7
TGATACTTTCCAGATTAACCCTTCTGCCATCCTAGGGTACTTTAACATTGGGGAGTTGGGTCATC
TAGACCCACTAGACAGAGCTCTGAACCTTTTTTCTTCAATGATTTGTGATCTTCACTGGTGTCCA
TGGATTACATGAAATCTTTCCACCTTTATCCACCTTTGTCATGGTAGGGAGAACACCTCAATGGA
AGGGGGGGGTCATCTGGACCCCATAGGATAGCACAAGGGTTAAAGATATGAAGAACAGCAGAGAA
TCATCCAGACCACAACACCTGATTAAAGAAAATAATGACAGACTGGATCCAGAACCACAGTCCTC
CCACAGAACCCAGAAAGAAGTGAGATGTTCTGGATCAGGTTCTACTGGGTCCACAAGTGGACCCA
TCTGTCTGCAGGAACAGAAGAACCTCAGCTGCTGGGAACCAGAATACGACCTCTGGCCTTCCTCT
TGTAGTAGATGAATCCAGCCAGAGACAAGACCAGACCCAGAATCAGCCCAGAAGCCCCGATGGCC
ACTTTGTTCCTCTCTGACTCTGGCATGGACGGGTCCCACTCTGTGACCAGAGGATCCTTCAGGCT
GGCGTGGTTCCACCTTACAGGAGATTTTCTCTCCAGACCTGGGCGTGTACTCCAGGTGGGAGTGG
ATCTGGTAGTACCAGTCCCCATCCTCCATCTCAGCGGTGGAGGTGACGTCAGAGGGAGACCTCCT
CCTTGCCTCGGAGCCAGCTGACCCTGGATGGTCTTGGGGTAGAAGTCGTAGACGCTGCAGACCAG
CATGGCGGGGATGGTGACCACCCAGAGGGCGCCCAGAGACTGGGACTCTGACTCTGGGTTTGGAC
GGATTTAGACAGCATGTTTTTTGTACCAGTTATCAATGTTGTGGTTTGCAGTAGGTTTCCCTTCT
GAGCTTTTCCTGGCGCTCAGTTCTGAAGTATCTTTGTTCGCGCGTTCTGCTGTCTTCACTCCATA
CTCCGTGTATCCAA
/medaka