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cDNA/BAC/Fosmid

Plasmid for Knock-in Experiments

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Medaka Strain
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Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

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From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

CLSTR00118     VD

Merge cluster information
Name CLSTR00118
Library ALL 487 cDNA [Download: FASTA]
olea 81 cDNA [Download: FASTA]
rolea10o18  rolea11n12  rolea11n17  rolea12f06  rolea12i11  rolea12k24  rolea12n04  rolea14b12  rolea14j04  rolea16b04  rolea16d05  rolea16f23  rolea17p14  rolea18c19  rolea18h13  rolea18p18  rolea1d09  rolea21e11  rolea21f07  rolea22b24  rolea22e12  rolea22e15  rolea24f15  rolea24g02  rolea24p12  rolea25b24  rolea25e11  rolea25h20  rolea26n12  rolea27k15  rolea28p06  rolea2e23  rolea31h14  rolea31p05  rolea32f14  rolea33c14  rolea34a21  rolea34b06  rolea34n12  rolea36e23  rolea36h19  rolea36l21  rolea36m13  rolea38b03  rolea38c15  rolea38j15  rolea38j17  rolea39h08  rolea39l14  rolea40k08  rolea41m22  rolea42i12  rolea44b18  rolea45k15  rolea46g08  rolea47p03  rolea48b12  rolea49o14  rolea4e16  rolea50h24  rolea51c12  rolea51j21  rolea52e16  rolea53f20  rolea54k19  rolea55m17  rolea57p08  rolea57p24  rolea59o06  rolea5j23  rolea61p06  rolea62o09  rolea63l20  rolea64a07  rolea65e11  rolea65n19  rolea65o03  rolea6e11  rolea6n08  rolea8c05  rolea9l03 
oleb 66 cDNA [Download: FASTA]
roleb11d20  roleb11f06  roleb14m17  roleb15g18  roleb17b07  roleb17b12  roleb17k07  roleb18c07  roleb19c01  roleb20e11  roleb20l11  roleb21a10  roleb21f22  roleb23a09  roleb23i14  roleb25g05  roleb27c21  roleb27n10  roleb28k14  roleb29h14  roleb29i23  roleb2g07  roleb30p23  roleb31d22  roleb32k05  roleb33e17  roleb35h23  roleb36a10  roleb36b12  roleb36k07  roleb38i22  roleb39f05  roleb39l03  roleb39p22  roleb3n23  roleb40n24  roleb41a14  roleb42l17  roleb44a01  roleb44c24  roleb45a06  roleb45m21  roleb47b22  roleb47f03  roleb47l12  roleb49b12  roleb49d18  roleb4h02  roleb53a01  roleb53c16  roleb54e10  roleb55b22  roleb57p07  roleb5c24  roleb5n07  roleb60p07  roleb61h17  roleb62a15  roleb62g17  roleb62k04  roleb62l22  roleb62m21  roleb63k23  roleb8f01  roleb8i09  roleb9m14 
olec 39 cDNA [Download: FASTA]
rolec11e13  rolec12a17  rolec15m08  rolec16g16  rolec18p20  rolec25b22  rolec27m20  rolec2g20  rolec33c10  rolec36o02  rolec37b24  rolec39g14  rolec3k06  rolec40c21  rolec40j16  rolec42j02  rolec46b12  rolec46j16  rolec48n19  rolec50m09  rolec51d20  rolec51j12  rolec52b15  rolec54o18  rolec55d12  rolec55l09  rolec58o11  rolec59o21  rolec5g04  rolec5n07  rolec60m16  rolec61c22  rolec63b11  rolec63g18  rolec63h20  rolec65l02  rolec8k21  rolec8n24  rolec9m22 
olvl 5 cDNA [Download: FASTA]
rolvl19b09  rolvl1l17  rolvl22g01  rolvl24e09  rolvl44p15 
olli 5 cDNA [Download: FASTA]
rolli13m22  rolli33c20  rolli36d08  rolli39f15  rolli50e17 
olbr 60 cDNA [Download: FASTA]
rolbr10b22  rolbr10e16  rolbr10i15  rolbr10l07  rolbr12c21  rolbr12p18  rolbr14i07  rolbr17a02  rolbr1i09  rolbr1i12  rolbr22b11  rolbr24b21  rolbr24i08  rolbr25k16  rolbr25p24  rolbr26j21  rolbr28j09  rolbr29a03  rolbr2f19  rolbr2k06  rolbr32f01  rolbr34a08  rolbr35m15  rolbr36a10  rolbr36d23  rolbr36p06  rolbr37f22  rolbr3g05  rolbr3h03  rolbr3o05  rolbr41n11  rolbr42h06  rolbr43a14  rolbr43i08  rolbr43o09  rolbr44f01  rolbr46o19  rolbr46p04  rolbr49b23  rolbr50n19  rolbr55k01  rolbr56g12  rolbr58f15  rolbr58f17  rolbr58l12  rolbr59d20  rolbr5g09  rolbr5j22  rolbr60p03  rolbr61b08  rolbr61j12  rolbr63a05  rolbr63b13  rolbr65i03  rolbr7h12  rolbr7l17  rolbr7n06  rolbr8j22  rolbr8p03  rolbr9d24 
olgi 92 cDNA [Download: FASTA]
rolgi10g01  rolgi10o08  rolgi12f09  rolgi13e18  rolgi14f03  rolgi16b03  rolgi16c11  rolgi16j05  rolgi16m13  rolgi17h13  rolgi17j01  rolgi18d23  rolgi18k06  rolgi18n18  rolgi1j16  rolgi1l19  rolgi21f17  rolgi24n10  rolgi25f14  rolgi26d01  rolgi26n12  rolgi27a14  rolgi27d23  rolgi27n24  rolgi28b16  rolgi28c13  rolgi28k18  rolgi29i05  rolgi29n19  rolgi2f23  rolgi2j12  rolgi30c15  rolgi30d06  rolgi31m01  rolgi31o19  rolgi33a18  rolgi33i06  rolgi33k08  rolgi35i24  rolgi35o09  rolgi36c04  rolgi38b03  rolgi38e23  rolgi38i22  rolgi39h16  rolgi3c06  rolgi40c03  rolgi40c22  rolgi40d21  rolgi40m14  rolgi41k13  rolgi42f16  rolgi43e21  rolgi43k11  rolgi43o09  rolgi46c20  rolgi46i05  rolgi46l04  rolgi47e15  rolgi47e21  rolgi47h16  rolgi49o08  rolgi49p19  rolgi52d04  rolgi52j24  rolgi53k24  rolgi56c19  rolgi56d22  rolgi56e15  rolgi57a06  rolgi59e01  rolgi5p03  rolgi60d01  rolgi60i11  rolgi60i24  rolgi61f17  rolgi62a04  rolgi62k19  rolgi62o07  rolgi63g18  rolgi64j21  rolgi65j14  rolgi6c02  rolgi6g02  rolgi6k23  rolgi6n23  rolgi6o20  rolgi7g21  rolgi9c06  rolgi9e18  rolgi9o19  rolgi9o22 
olki 62 cDNA [Download: FASTA]
rolki10g14  rolki10l20  rolki15f13  rolki17i07  rolki17j19  rolki18d08  rolki19j19  rolki1n14  rolki22d09  rolki22g21  rolki22l10  rolki22l18  rolki23l24  rolki25p14  rolki26a06  rolki28b06  rolki30i14  rolki31d04  rolki32h14  rolki32j12  rolki33i02  rolki34i24  rolki35d06  rolki37m15  rolki37o18  rolki38a12  rolki39b19  rolki39e24  rolki39i21  rolki39m19  rolki3p06  rolki40o05  rolki41e08  rolki41m03  rolki42i19  rolki45b19  rolki46i22  rolki47m02  rolki49g13  rolki49g21  rolki49l13  rolki51o11  rolki53c22  rolki53e05  rolki55d11  rolki57h01  rolki57m15  rolki59c17  rolki5b08  rolki5h01  rolki5n10  rolki60l12  rolki60n13  rolki61p11  rolki62k10  rolki63g16  rolki63j22  rolki6h06  rolki6h14  rolki7i08  rolki8b01  rolki8n01 
olsp 66 cDNA [Download: FASTA]
rolsp10b20  rolsp12g10  rolsp13f02  rolsp13m08  rolsp15j01  rolsp16e24  rolsp17a22  rolsp17k20  rolsp18c09  rolsp19b09  rolsp1d12  rolsp1d14  rolsp1j15  rolsp20f24  rolsp20h19  rolsp21g08  rolsp22a02  rolsp22a08  rolsp25m12  rolsp27h22  rolsp28i17  rolsp2i18  rolsp31j20  rolsp32j05  rolsp32j10  rolsp33b04  rolsp35p07  rolsp36n06  rolsp37d06  rolsp37f07  rolsp38l04  rolsp38m03  rolsp41n01  rolsp42n14  rolsp43m22  rolsp44d10  rolsp44e05  rolsp45i05  rolsp47a13  rolsp47g16  rolsp47g21  rolsp47h13  rolsp4n03  rolsp50a23  rolsp50i02  rolsp51j10  rolsp51n07  rolsp52k04  rolsp53h20  rolsp53i02  rolsp53l23  rolsp53p07  rolsp55e04  rolsp55g11  rolsp57c09  rolsp58p21  rolsp59b17  rolsp59e11  rolsp59j04  rolsp5p22  rolsp60a12  rolsp63j03  rolsp7l09  rolsp8b15  rolsp9f22  rolsp9i10 
olte 4 cDNA [Download: FASTA]
rolte22p19  rolte29o19  rolte32m04  rolte32o16 
olova 7 cDNA [Download: FASTA]
rolova24g07  rolova25p23  rolova35o18  rolova48j03  rolova55j06  rolova6j21  rolova7m23 

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/


Contig information - 1
Name Contig1
Clone count 2 clones
Length 923
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit prothymosin, alpha b [Danio rerio]
Score 224
Evalue 1.67395e-16
Detail
Sequence [Download: FASTA]
>Contig1
ACACAAACTTCGCACATACATCAAAACAGGCCGTCATAAAACAAAAGTCGCTGACAAAAACAAAA
GAAAGAGGCTGTCCTCTTTGGCCTTACCCCCCCATACAAACAAACTAGTTATGGTACAGCTAAAG
TACATACATTAAATTTACTGGAATGCTCTGAGTTCAACGGCGTTTTGCATTTTTTTATTTTGTTT
TTTACACGTTTTTCTAGCATCTGTTGATATTGTAACATGGTCAACCAAGTAAAATCTTTTGTCAA
AGAAGCACCGATTTGGTTTGACAGATCGCTGCTGGAGGGAGCGGCCCCTCCTAACAATATGTACA
AAAATATAAAATGTAAATAAAAATACAAACAAATTCTCCTTTTGAGTTGTTGAAGAGAAGCTGGA
TTTCTGGGTTGGCTTCTTCTAGAAAATTTGCAGCTTAGAGGGTAGATCGATGTGGATGAGCTCTA
CTTGCTAATGACCATGTTGATTTTTATTATTATTTTCCTTTAGATCAGTCCTCCAGCGCCCCCGC
CTCACAGGCCGCTGCTCAGAGGTGGGGGCAGGAAGTGGTTCAGCAGGAAGCGCATCAATCGTCAT
CGTCAGTTTTCTGCTTCTTGGGATCGACGTCGTCCTCGTCGTCCTCATCGTCGTCCTCGGCCGGC
CGTTTGGTACGGCCCTCGAGTTCTTCTTCGTCATCCTCGTCATCGTCCTCGTCGCCTAAAGAGTT
CACAGTGAGTTTTCCGTCGTTTTGGGGTAAATGGCGAAATTTAGAAGAACCCCATTTACCTTCTA
CGTCATCCTCGTCCTCTTCGTCCACGTCGTCCTCATCCTCGTCGTCCACATCGGGCTCGCCGTTC
TCCTCGTTCTCCTGAAAACACAGAACAGCTTGAGCTTCCTGTTTGGAAAGAGTTGATGCTGAGCG
GGCCGCCCCCTCA

Contig information - 2
Name Contig2
Clone count 4 clones
Length 828
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit GF14847 [Drosophila ananassae]
Score 295
Evalue 8.11257e-25
Detail
Sequence [Download: FASTA]
>Contig2
AAGAACTTAATTTTTTTTGTAATAAAGAATTAACAATATTTGCCACTTTACGGTTTCAATGAAAC
TGGCGCCACTTTGACAGTTTTTACAGCAGAAAAAGGACGAACTGTTCCTTTAAAAGCTCCATACC
AAAAACAGATCTCCTGCAAGAAAACTAAACTCTTTACAAATGAGCCAAAAAGACTGGAAAACTCA
CAATTTACAAAGAAACTTCTAAAACAGTTTAGATCTCATTTCATAGAGAAAATAAAAGAGGAAAA
TAAGCGGCGGGTCCCGGATCGACAGCAGCAGAGCGGTAGCGGTGGGTTGAAGGAGGTCATCCCTC
CCTGCTGCAGGTGTGGAGTTTTATCTCCTCCTGCGGTCATCTCTGTTTCTGTCTCGGTTTTCTTT
ATTCCTCTCCCTCTCCCTCTTCTCCTCAACCTCTCTCTCCCTCCCTCTATCCCTCCCTCTTTCCC
TCTCCATGTTTCTCTCTCCATCTCTTGCTCTGTCCATTTTTCGTCTTCTGTCCTCCTCCTCCTCT
GATCCTTCGTCCCGCCTACGCCGTCGGGAGTCCTCGTGGGCGCGCTCGGGCAAATCTGGTGCGTG
CTTCCTCTGGTCCTTCCTCGCTGCCTTCTCGTCGTCATCGTCGTCTTCATCGTTGCCCCGCTTGC
TTCTGTGTTTCCTCTTGTCAGGTTTCTCCTTCTTCTTGCTCTTTTCAGTCTTTTTCTTCTCTTCT
CTGCGTCCTTTTCTCTTTTTGTGTTTGCTGTCTGAGTCTGAGCTGCTGGAGGAGGAGGAGGAGTC
TGATGAAGAATCAGATTCGCTAGAAGATTCTGAGGAGGAATCTGAGGA

Contig information - 3
Name Contig3
Clone count 4 clones
Length 912
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit prothymosin, alpha b [Danio rerio]
Score 252
Evalue 1.53689e-23
Detail
Sequence [Download: FASTA]
>Contig3
CACAACTTCGCACATACATCAAAACAGGCCGTCATAAAACAAAAGTCGCTGACAAAAACAAAAGA
AAGAGGCTGTCCTCTTTGGCCTTACCCCCCCATACAAACAAACTAGTTATGGTACAGCTAAAGTA
CATACATTAAATTTACTGGAATGCTCTGAGTTCAACGGCGTTTTGCATTTTTTTATTTTGTTTTT
TACACGTTTTTCTAGCATCTGTTGATATTGTAACATGGTCAACCAAGTAAAATCTTTTGTCAAAG
AAGCACCGATTTGGTTTGACAGATCGCTGCTGGAGGGAGCGGCCCCTCCTAACAATATGTACAAA
AATATAAAATGTAAATAAAAATACAAACAAATTCTCCTTTTGAGTTGTTGAAGAGAAGCTGGATT
TCTGGGTTGGCTTCTTCTAGAAAATTTGCAGCTTAGAGGGTAGATCGATGTGGATGAGCTCTACT
TGCTAATGACCATGTTGATTTTTATTATTATTTTCCTTTAGATCAGTCCTCCAGCGCCCCCGCCT
CACAGGCCGCTGCTCAGAGGTGGGGGCAGGAAGTGGTTCAGCAGGAAGCGCATCAATCGTCATCG
TCAGTTTTCTGCTTCTTGGGATCGACGTCGTCCTCGTCGTCCTCATCGTCGTCCTCGGCCGGCCG
TTTGGTACGGCCCTCGAGTTCTTCTTCGTCATCCTCGTCATCGTCCTCGTCGCCTTCTACGTCAT
CCTCGTCCTCTTCGTCCACGTCGTCCTCATCCTCGTCGTCCACATCGGGCTCGCCGTTCTCCTCG
TTCTCCTGAAAACACAGAACAGCTTGAGCTTCCTGTTTGGAAAGAGTTGATGCTGAGCGGGCCGC
CCCCTCACCTTTCCATTGGTGGCAGCATCTTTGCCGTTTTCCTTCTCCTCTGCCAGCTTCTTCTC
CT

Contig information - 4
Name Contig4
Clone count 405 clones
Length 1026
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit prothymosin, alpha b [Danio rerio]
Score 235
Evalue 1.05373e-17
Detail
Sequence [Download: FASTA]
>Contig4
TAAGTCCGGTTATTGTCAACAACAAACTTCGCACATACATCAAAACAGGGGCCGGTCATAAAACA
AAAGGTCGCTGGACAAAAACAAAAGAAAGAGGCTGTCCTCTTTGGCCTTACCCCCCCATACAAAC
AAACTAGCTTATGGTACAGCTAAAGTACATACATTAAATTTACTGGAATGCTCTGAGCTTCAACG
GCGTTTTGCATTTTTTTATTTTGTTTTTTACACGTTTTTCTAGCATCTGGTTGATATTGGTAACA
TGGTCAACCAAGTAAAATCTTTTGTCAAAGAAGCACCGATTTGGTTTGACAGATCGCTGCTGGAG
GGAGCGGCCCCTCCTAACAATATGTACAAAAATATAAAATGTAAATAAAAATACAAACAAATTCT
CCTTTTGAGTTGTTGAAGAGAAGCTGGATTTCTGGGTTGGCTTCTTCTAGAAAATTTGCAGCTTA
GAGGGTAGATCGATGTGGATGAGCTCTACTTGCTAATGACCATGTTGATTTTTATTATTATTTTC
CTTTAGATCAGTCCTCCAGCGCCCCCGCCTCACAGGCCGCTGCTCAGAGGTGGGGGCAGGAAGTG
GTTCAGCAGGAAGCGCATCAATCGTCATCGTCAGTTTTCTGCTTCTTGGGATCGACGTCGTCCTC
GTCGTCCTCATCGTCGTCCTCGGCCGGCCGTTTGGTACGGCCCTCGAGTTCTTCTTCGTCATCCT
CGTCATCGTCCTCGTCGCCTTCTACGTCATCCTCGTCCTCTTCGTCCACGTCGTCCTCATCCTCG
TCGTCCACATCGGGGCTCGCCCGTTCTCCTCGTTCTCCTTTCCATTGGGTGGCAGCCATCTTTGC
CGGTTTTCCTTCTCCTCTGGCCAGCCTTCTTCTCCCTTCAGGTCCCTTGGCAGAGATATCCGAAC
CAGAGCCCAACTTGTGTATCTGCCATTGGTTGCGGCGGAAAAAAATAAAGACTGGAAATCAAAGA
AGAAATTAATCCTCCGCGCGCTTCCTGAATCTTTATTGTGCCAGTGGCCCC
/medaka