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Plasmid for Knock-in Experiments

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Medaka Tools

Medaka Strain
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References
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Related documents

Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

Featured Link

From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

CLSTR00036     VD

Merge cluster information
Name CLSTR00036
Library ALL 480 cDNA [Download: FASTA]
olea 0 cDNA
oleb 2 cDNA [Download: FASTA]
roleb16e15  roleb23i11 
olec 0 cDNA
olvl 5 cDNA [Download: FASTA]
rolvl13g06  rolvl1d01  rolvl43o05  rolvl50h12  rolvl63m24 
olli 10 cDNA [Download: FASTA]
rolli11l22  rolli16f02  rolli21g14  rolli47m22  rolli49n18  rolli50m08  rolli62b19  rolli63g02  rolli65k01  rolli8k13 
olbr 7 cDNA [Download: FASTA]
rolbr18i11  rolbr1e18  rolbr26g02  rolbr43l15  rolbr47i17  rolbr50b16  rolbr63l13 
olgi 177 cDNA [Download: FASTA]
rolgi10c01  rolgi10c22  rolgi10l19  rolgi11d08  rolgi11f04  rolgi11i04  rolgi11j02  rolgi11j10  rolgi12a06  rolgi12k16  rolgi12o13  rolgi13e19  rolgi13f06  rolgi13h19  rolgi13n05  rolgi14d03  rolgi14j01  rolgi14l03  rolgi14l19  rolgi14m11  rolgi14n07  rolgi15f12  rolgi15g01  rolgi16e04  rolgi16f24  rolgi16g02  rolgi16l04  rolgi16n06  rolgi16o19  rolgi17b06  rolgi17i24  rolgi17j13  rolgi17m07  rolgi17o11  rolgi18c01  rolgi18d03  rolgi18d18  rolgi18i01  rolgi18i15  rolgi19k18  rolgi1l02  rolgi20e08  rolgi20f03  rolgi20j03  rolgi20l19  rolgi20m08  rolgi20o16  rolgi21d01  rolgi21j11  rolgi21o13  rolgi22b04  rolgi22c13  rolgi22c24  rolgi22j21  rolgi22k05  rolgi22m04  rolgi22o14  rolgi23h22  rolgi24d05  rolgi24e02  rolgi24e10  rolgi24i15  rolgi24n02  rolgi26j24  rolgi26k24  rolgi26l04  rolgi26n13  rolgi26o03  rolgi26p10  rolgi27e22  rolgi29i07  rolgi2b11  rolgi2h06  rolgi2i02  rolgi2j22  rolgi2n20  rolgi2p19  rolgi30h01  rolgi31b21  rolgi31g08  rolgi31i21  rolgi31j21  rolgi31m11  rolgi32f09  rolgi32j21  rolgi33b14  rolgi33i22  rolgi34i02  rolgi34j21  rolgi36d14  rolgi36n06  rolgi37g03  rolgi39c01  rolgi39c19  rolgi39h12  rolgi3a21  rolgi3l01  rolgi3p11  rolgi40h06  rolgi40h18  rolgi40j11  rolgi41b16  rolgi41p24  rolgi42c05  rolgi43e08  rolgi44e09  rolgi44e19  rolgi44j15  rolgi44m16  rolgi44n22  rolgi45d13  rolgi45o04  rolgi46a22  rolgi46f01  rolgi47a14  rolgi47c23  rolgi47d04  rolgi47o22  rolgi49f04  rolgi49i06  rolgi49m13  rolgi49o05  rolgi49p08  rolgi4n04  rolgi50a20  rolgi50d08  rolgi50h13  rolgi50k04  rolgi51o19  rolgi52b07  rolgi52h10  rolgi53f01  rolgi54h12  rolgi55j21  rolgi55k02  rolgi56i20  rolgi56j10  rolgi57k09  rolgi58a03  rolgi58a12  rolgi58f09  rolgi58i04  rolgi58k11  rolgi58n01  rolgi58p01  rolgi5e06  rolgi5i23  rolgi60a05  rolgi60b22  rolgi60g18  rolgi60h22  rolgi61j02  rolgi61j05  rolgi61j24  rolgi61n13  rolgi61p20  rolgi62b07  rolgi62i10  rolgi62k01  rolgi62o20  rolgi63a22  rolgi63l24  rolgi64e05  rolgi64m15  rolgi64p20  rolgi65n15  rolgi65o19  rolgi6n09  rolgi7f21  rolgi7k01  rolgi7o11  rolgi8b04  rolgi8k14  rolgi9f02  rolgi9i08  rolgi9l05  rolgi9o12 
olki 90 cDNA [Download: FASTA]
rolki10e16  rolki10f22  rolki11k13  rolki11p10  rolki12b22  rolki12n08  rolki14h16  rolki14p18  rolki15d01  rolki16b17  rolki17d01  rolki17f18  rolki18o12  rolki19k01  rolki20b09  rolki22i02  rolki23m21  rolki26b01  rolki27j01  rolki28p21  rolki29d04  rolki29m11  rolki2a23  rolki2n11  rolki31d24  rolki33a23  rolki34p03  rolki35b07  rolki35f05  rolki35j18  rolki35o15  rolki36f21  rolki36j16  rolki37i18  rolki37m16  rolki38f12  rolki38i22  rolki38p10  rolki39f19  rolki39l14  rolki3f01  rolki3k18  rolki41d13  rolki41g09  rolki42c08  rolki44i22  rolki44o11  rolki45b23  rolki46d14  rolki47a19  rolki47c04  rolki47n06  rolki48e01  rolki4c08  rolki4k11  rolki4m18  rolki51h04  rolki51l02  rolki51o08  rolki52c12  rolki52e14  rolki52i20  rolki53c12  rolki53h20  rolki54b18  rolki54p24  rolki55h14  rolki56a23  rolki56c09  rolki56g04  rolki56i02  rolki56j03  rolki57d01  rolki58k22  rolki59f03  rolki59f22  rolki60g11  rolki60i06  rolki61o23  rolki64j08  rolki64k15  rolki65c21  rolki65k01  rolki6e10  rolki7k06  rolki7l22  rolki7o14  rolki8f03  rolki8k15  rolki9b23 
olsp 151 cDNA [Download: FASTA]
rolsp10h21  rolsp10o17  rolsp11a05  rolsp11c12  rolsp11e20  rolsp11k11  rolsp11n20  rolsp11p21  rolsp12f02  rolsp12f13  rolsp12g03  rolsp12j10  rolsp12p07  rolsp13n02  rolsp14a04  rolsp14e02  rolsp14j11  rolsp14o24  rolsp15a04  rolsp15e16  rolsp15o06  rolsp16b11  rolsp16e11  rolsp17d13  rolsp17i10  rolsp17p14  rolsp18b05  rolsp18e18  rolsp18i01  rolsp18l08  rolsp19b02  rolsp19n18  rolsp1c01  rolsp1e23  rolsp1m01  rolsp20a16  rolsp21k13  rolsp21m21  rolsp22l13  rolsp23e02  rolsp23p06  rolsp24g16  rolsp24n24  rolsp25f11  rolsp25i12  rolsp25i24  rolsp26b03  rolsp26d19  rolsp26e23  rolsp26p06  rolsp27k05  rolsp28g01  rolsp28j06  rolsp28p05  rolsp29j01  rolsp29l11  rolsp2c07  rolsp2l21  rolsp30d22  rolsp31j08  rolsp32b07  rolsp32k08  rolsp32l12  rolsp32o23  rolsp33d04  rolsp33l12  rolsp34j11  rolsp34j24  rolsp35a07  rolsp35j23  rolsp35k09  rolsp36g06  rolsp36h11  rolsp36n10  rolsp37a07  rolsp37b15  rolsp37d03  rolsp37g22  rolsp37n06  rolsp37o18  rolsp39e12  rolsp3d13  rolsp40e20  rolsp40k14  rolsp41l15  rolsp42b20  rolsp42n22  rolsp42o09  rolsp43d02  rolsp43g17  rolsp43m01  rolsp43m10  rolsp43m21  rolsp44f03  rolsp45h19  rolsp45m03  rolsp45n13  rolsp46c07  rolsp46j05  rolsp46k23  rolsp46o06  rolsp47o23  rolsp4k04  rolsp4n13  rolsp50f17  rolsp50g13  rolsp50i17  rolsp50n24  rolsp51i23  rolsp51k06  rolsp51p01  rolsp54e11  rolsp54g06  rolsp55a14  rolsp55a19  rolsp55p19  rolsp56m23  rolsp57l17  rolsp58c21  rolsp58l15  rolsp59c05  rolsp59m17  rolsp5b23  rolsp5c23  rolsp5f13  rolsp5o01  rolsp60c13  rolsp60i18  rolsp61d06  rolsp61f05  rolsp61m13  rolsp62a01  rolsp62c20  rolsp62f02  rolsp62k12  rolsp62n20  rolsp63j15  rolsp63l24  rolsp64n02  rolsp65a17  rolsp65d10  rolsp65h21  rolsp6l15  rolsp7b18  rolsp7c16  rolsp8f01  rolsp8k20  rolsp8m05  rolsp8n04  rolsp9c14  rolsp9p08 
olte 26 cDNA [Download: FASTA]
rolte10b24  rolte12n04  rolte16g19  rolte29n16  rolte34d23  rolte36n02  rolte39c11  rolte39l23  rolte40o23  rolte42o07  rolte45n23  rolte46h20  rolte53c13  rolte54b23  rolte58a01  rolte59h20  rolte5m12  rolte63f24  rolte64g23  rolte64i20  rolte69e06  rolte6m16  rolte70c05  rolte70j09  rolte8h18  rolte8m13 
olova 12 cDNA [Download: FASTA]
rolova10f20  rolova16a22  rolova27o21  rolova38h23  rolova40b15  rolova43p07  rolova44a21  rolova4p01  rolova51e19  rolova56p07  rolova58e16  rolova5d17 

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/


Contig information - 1
Name Contig1
Clone count 26 clones
Length 1328
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit classical MHC class molecule, alpha-chain [Oryzias latipes]
Score 953
Evalue 8.50781e-101
Detail
Sequence [Download: FASTA]
>Contig1
CAGTCAAGCGATGTGTTGCATCTATATGTCTATAAGCTTCAAAATATACAAACATAATCAATAAA
GACAGATAATATTTAGAACTGAAACAACATTTAAATGAGCAGAAACAAGTTGCCATCACAGAACA
CACAACTTTAGTTTCTACAGATAAAAAAAGGATATGAAAAAGCATAAGCATTTTAGTAAAACCAA
GTCCAATGTATCTGTTTTATATGTTTTTATGCTTTTAAAGACCAAATGTGTCTGTTTGCAAGCTG
GAATTTTCTCAAAGATTTAAAATAGCAAAGCATAACTGAGTCTCTTAGATATGGTAAATCTTATT
AATTTGTATTAAGAAGATGTTTTTTTTTTTTTTAATCATCATAAGAAAATTGCACTTCACAGGGA
AAAAGGGCTTTTTCTTTGCTCCTTAATATTTTGCAGATTTATTTCCCAAACTGTTCAGAGGAGAG
TTCATCTCTCAGGCTGATGGATTTTCTGGTTGCAGCATCTGCTGCTGGATCTCCTTGTTGTCTAC
AGGAGATGGTGGAGGCTTGACCAAATTGAAAAAGTTCATCTTCTTGTAAAAAATGAATGCAGACA
CAGAGAGAACGACAGCGATAACAGCAACAAGGACACCAATGATGATCAACATCTGACTGGAAGAA
CCTTCATTGGTTCTGATCTTTGCTTTCTCCAGTTTAGTGATGACGTCTTCTTTGACTCCAGAGAG
CTGAAACACACATTCATATCTCTGCATGTCTTCTCCTGATGGAGGTTGGAGATCAACGCTCATCT
GGAAAGTTCCATCATTGTTGGGGGAGGATCTGTCCTTTCTCCACTCCTTCATGGATCTCCTCTCC
ATCTCTCCTCCACAGCAGTTCAGCTCTGTCAGGATAGAAACCTGTAGCATGACAGCTGACTGCAG
AGGAGGACGACTTCTGGAGGAGAGACACTGATGGAGGAACTTTTCTCATCAAAGAGCTGCTTCCA
TAATTGACGTATTTCTCCAGCCATTCAGGACAAATCTGGGTTAGGTAGTTCTTCCGTCCTACTGT
GAAAGCTTTGTTATCGTCCCACTCGTCTTTGGTGATGACAGCCTGCTGTTTTGCAGCAATCCATG
ATTCTGACTTCAGGTCAAGAGCAATGAAGTCTTCTCCATCATAACCGTATTGATCATAACCTTTG
ACCTCTCCAGTCTCATCATCCCACTCACATCCGTACATGTTCTGAACCACATGAGCACCTCCAGT
TTGGTTGAAGCTCTGCTTTAATATTTCAATTCTGGCTTTGAAGGTATGCTGGTCACCCAGCCGGT
TTTCAGTTTCTGTCTTCCAGTACTGTCC

Contig information - 2
Name Contig2
Clone count 422 clones
Length 1450
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit classical MHC class I molecule, alpha-chain [Oryzias latipes]
Score 989
Evalue 6.41554e-105
Detail
Sequence [Download: FASTA]
>Contig2
CTGAGAAAAGCATCAAACAGGAAATTTTACTTAACATTTGGTTTCCCCACACAAAGTGGATTTAA
CCCAAACCTTTATATTGTAATGTCTACACAGAAAAATGTTTCTAAATCCATCAAAAACACACAAG
TCAATACAAGAAAAGCACAAGACAAGAACCAAAACCACAAACTATTAAGATTAACTTTCTTTCAT
TTTCCTTTATAACCCAGGAGTAAAACATATCAAGCTGCATATTGACTCTATAAGCTTCAAAATAT
ACAAACATGATGAATAAAGACAAATAATATTTAGAAATGAAACAAAATTTTAAATGAGCAGAAAC
AAGTTAACAACTTCAACAACTTTAATTGACTTCAGATTTATCAGATGTGGAATATTGATAGAATA
AAACATTTTAATGAACCAAACTCCAATTTCTCTGTTTCTTTTATTTTCATGCTTTAATTGTTTGT
TGCTGTTTGTAAGCTGACAACTTTTTAAGGATTTAATATAGCAAAGAATAACTGAGTTTATGAGA
TATTTGGTAACCCTTGTTCATTTGTAGAAAGAAGATTGTTGTTGTTTGTAAATCAACATGAAAAA
AAATTAAATTTACAGGAAAGATTGTTGCAGATTTGATTCCAAAACTGTTCAGAGGAGAGTTCATC
TCTTAGGCTGATGGATTTTCTGGTTGAAGCATCTGCTCCTGGATCTCCTTGTTGTCTACAGGGAG
ATGGTGGACGCTTGGGCGTTCTTCTTCTTGTAAAAAAATGAATGCAGACACAGCAACGACAGCCC
ATAACAGCCAGCGAGGGACACCCAATGGATGATCAACATCCTGACTGGGAAGAACCCTTCCATTG
GGTTCTGATCCTTTGCTTTCCTCCAGTTTTAGTGGATGACGTCTTCTTTGGACTCCAGAGAGCTG
AAACCACACATTCCATATCTCTGCATGTCTTCTCCTGATGGAGGTTGGAGATGAACGCTCATCTG
GAAAGTTCCATCATTGTTGGGGAGGATCTGTCCTTTCTCCACTCCTTCATGGATCTCCTCTCCAT
CTCTCCTCCACAGCAGTTCAGCTCTGTCAGGATAGAAACCTGTAGCATGACAGCTGACTGCAGAG
GAGGACGACTTCTGGAGGAGAGACACTGATGGAAGAACTTTTCTCATCAGAGAGCTGCTTCCATA
ATTCACGTATTTCTTCAGCCATTCAGGACAAATCTGGGTTAGGTAGTTCTTCCGTCCTGCCATTA
AAGCTTTGTCATTGTCCCACTTGTGTTTGGTGATTTCAGCCTGCTGTTTTGGAGCAATCCATGAT
TCTGTCTTCAGGTCAAGAGCAATGAAGTCTTCTCCATCATAACCGTATTGATGAAAACTGTTGAC
CGCTCCAGTCTCCTCATCCCACTCACATCCGTACATCCACTGAAACACATGAACACCTCCAGTTT
GGTTGAAGCGCGGCTTTAAT
/medaka