Strains

cDNA/BAC/Fosmid

Plasmid for Knock-in Experiments

Information

Medaka Tools

Medaka Strain
in Publications

References
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Related documents

Biological experiments for elementary, junior high and high school students (Japanese)
Medaka experiments that anyone can do (Japanese)
Life of my teacher Tatsuo AIDA (Japanese)

Featured Link

From spawning to hatching of medaka ~nibb×niconico 
A checklist of the parasites of medaka 
medaka SNP(Beta)
Official Endocrine Disruption Website
M-marker 2009
Ensembl Medaka
M-Base
NBRP Medaka Genome Project
MEPD
Genomicus - Synteny browser -
ZFIN
ZIRC
UTGB Medaka
UCSC In-Silico PCR
The Fish Biology Journal of Medaka (Vol.1 - Vol.3)
The Fish Biology Journal of Medaka (Vol.4 - Vol.11)
Introduction to Medaka (NBRP Online Forum 2020)

CLSTF00035     VD

Merge cluster information
Name CLSTF00035
Library ALL 123 cDNA [Download: FASTA]
olea 13 cDNA [Download: FASTA]
olea11a02  olea13a06  olea16o21  olea37j21  olea38d05  olea3i22  olea45b23  olea53m24  olea54c09  olea56e10  olea61b22  olea61o02  olea64c02 
oleb 12 cDNA [Download: FASTA]
oleb11g06  oleb22e13  oleb23h18  oleb31f03  oleb33b23  oleb47j15  oleb53o24  oleb56j22  oleb57g14  oleb59o04  oleb63h04  oleb8m22 
olec 13 cDNA [Download: FASTA]
olec23f07  olec2b19  olec31h03  olec36c02  olec49n18  olec4h03  olec54p01  olec5d04  olec61g11  olec62h09  olec62h19  olec6d18  olec8i18 
olvl 5 cDNA [Download: FASTA]
olvl1c24  olvl1o11  olvl31c03  olvl32l11  olvl41k10 
olli 8 cDNA [Download: FASTA]
olli17l09  olli29d14  olli32e14  olli34k13  olli38l11  olli56g01  olli63a10  olli65j09 
olbr 19 cDNA [Download: FASTA]
olbr15m20  olbr1b17  olbr24c24  olbr29h08  olbr32p15  olbr35a20  olbr37c01  olbr37j10  olbr39d12  olbr41p06  olbr52g17  olbr55c01  olbr56h02  olbr61k17  olbr62c21  olbr65c12  olbr65p19  olbr7c13  olbr7d12 
olgi 16 cDNA [Download: FASTA]
olgi10i04  olgi12g20  olgi14c13  olgi18a08  olgi19p16  olgi22h13  olgi30j14  olgi34i11  olgi46d21  olgi51d01  olgi53m14  olgi56n01  olgi63d06  olgi64h16  olgi7n14  olgi9o02 
olki 18 cDNA [Download: FASTA]
olki11h06  olki12d24  olki12k09  olki14p16  olki18n22  olki24p13  olki32f16  olki35e11  olki35i19  olki37o08  olki40m11  olki42n15  olki45c03  olki46o14  olki4i12  olki4k18  olki53f05  olki59k22 
olsp 9 cDNA [Download: FASTA]
olsp22c24  olsp23c11  olsp26j16  olsp29m16  olsp2g17  olsp32b15  olsp40o18  olsp40o23  olsp58n24 
olte 9 cDNA [Download: FASTA]
olte13i07  olte14m16  olte28g01  olte51i06  olte52g05  olte56j03  olte59d12  olte65l17  olte6f16 
olova 1 cDNA [Download: FASTA]
olova18i08 

Before using Assemble Viewer, please ensure that you have the latest version of Java. If you are not using the latest Java version, please download it here. http://java.com/ja/download/


Contig information - 1
Name Contig1
Clone count 1 clones
Length 769
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit PREDICTED: hypothetical protein [Danio rerio]
Score 111
Evalue 0.00152905
Detail
Sequence [Download: FASTA]
>Contig1
GATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTTTTT
GGAGACTTTTAGTCGATTTATTGTTTTTTTTTTAAAAGATTTCCGACGAAAACTGGTGGGCATGT
GCAGAAAAAACATGGAAACATCAACAACTATCAAGACCGACTTTCTTCAATCTACTAAACACGAG
TGTAAACTTTTCAGTTTATACACGAAGGACAACGAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAA
GGCGGCCATTCGGAGACAGCGACGCAGAGACTTGAAGCGGGCCCAGCTTGCTGAACTCGCCGGAT
TTTTCCTGCTCAAAAACAAGACGGGCAAGTGTACGAGACTATCCGGCTATCTTCCCAGCGGCGCC
ATGGCCCCCGCTAACACCACGCAGTATCTGATGAGCAACGTGTACGAAGACATGCAGTTGGACCG
TCCAATGGACGTTGTTCCGCCTGTTTTACACAAAACCAACGCTCTCAAGTACAGCGACTGCTTGT
CTCCTCACAGCATGGAGTCAGACTCGGATTTCGATGACTGTCTTGCGTTTCAACAGAGGAACTTC
GAGGAAGCTTTCGACCTCGTCTAGAAACTGGAATCTGGTCTACGTGGCCTAGTGAAACAGCGCTC
GTCTCTACAGTAGTTACGTCACGAGGACATGTGCTAAAGCGGCGCTTTGGACGCTTCCCATCCAC
TANGGGGCGCTCTGTCGCTGCGTGGCGTCACTCACAGGAATCAGCGGCACGCCA

Contig information - 2
Name Contig2
Clone count 1 clones
Length 780
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit hypothetical protein CLOSS21_00425 [Clostridium sp. SS2/1]
Score 94
Evalue 0.147807
Detail
Sequence [Download: FASTA]
>Contig2
GATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTTTTT
GGAGACTTTTAGTCGATTTATTGTTTTTTTTTTAAAAGGTAGTAGTAGTTGTTTCCTTTTTTACA
AAAGTGGAAGATTCTGTTTTTTTGCTTCTGATCAATATTTTTTTTACCGAACAACGAAGTTTGTC
GAGTCATCTCGGGATACTTTTCTCGTCAGATTTCCGACGAAAACTGGTGGGCATGTGCAGAAAAA
ACATGGAAACATCAACAACTATCAAGACCGACTTTCTTCAATCTACTAAACACGAGTGTAAACTT
TTCAGTTTATACACGAAGGACAACGAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAAGGCGGCCAT
TCGGAGACAGCGACGCAGAGACTTGAAGCGGGCCCAGCTTGCTGAACTCGCCGGATTTTTCCTGC
TCAAAAACAAGACGGGCAAGTGTACGAGACTATCCGGCTATCTTCCCAGCGGCGCCATGGCCCCC
GCTAACACCACGCAGTATCTGATGAGCAACGTAGGAACTTCGAGGAAGCTTTCGACCTCGTCTAG
AAACTGGAATCTGGTCTACGTGGCCTAGTGAAACAGCGCTCGTCTCTACAGTAGTTACGTCACGA
GGACATGTGCTAAAGCGGCGCTTTGGACGCTTCCCATCCACTAGGGGGCGCTCTGTCGCTGCGTG
GCGTCACTCACAGGAATCAGCGGCACGCCCACTCGAGTTGTGGGTCCCGCCCCGAGGGTTATGGG

Contig information - 3
Name Contig3
Clone count 1 clones
Length 770
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit hypothetical protein CLOSS21_00425 [Clostridium sp. SS2/1]
Score 93
Evalue 0.186913
Detail
Sequence [Download: FASTA]
>Contig3
GATATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTTT
TTGGAGACTTTTAGTCGATTTATTGTTTTTTTTTTAAAAGGTAGTAGTAGTTGTTTCCTTTTTTA
CAAAAGTGGAAGATTCTGTTTTTTTGCTTCTGATCAATATTTTTTTTACCGAACAACGAAGTTTG
TCGAGTCATCTCGGGATACTTTTCTCGTCAGATTTCCGACGAAAACTGTTTATACACGAAGGACA
ACGAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAAGGCGGCCATTCGGAGACAGCGACGCAGAGAC
TTGAAGCGGGCCCAGCTTGCTGAACTCGCCGGATTTTTCCTGCTCAAAAACAAGACGGCATGGAG
TCAGACTCGGATTTCGATGACTGTCTTGCGTTTCAACAGAGGAACTTCGAGGAAGCTTTCGACCT
CGTCTAGAAACTGGAATCTGGTCTACGTGGCCTAGTGAAACAGCGCTCGTCTCTACAGTAGTTAC
GTCACGAGGACATGTGCTAAAGCGGCGCTTTGGACGCTTCCCATCCACTAGGGGGCGCTCTGTCG
CTGCGTGGCGTCACTCACAGGAATCAGCGGCACGCCACTCGAGTTGTGGGTCCCGCCCGAGGGTT
ATGGGCTCAAGGTAAACCGAGGCAGGTATTTTGGGGTTGCTGCATAATCACTGATGGAATTCGGT
GATGATGTGAACCACTGCCGCAGGTAAAGGTTCTTTCCGCAGTTACTGTTGTCTG

Contig information - 4
Name Contig4
Clone count 1 clones
Length 719
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit PREDICTED: hypothetical protein [Danio rerio]
Score 99
Evalue 0.0328805
Detail
Sequence [Download: FASTA]
>Contig4
GATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTTTTT
GGAGACTTTTAGTCGATTTATTGTTTTTTTTTTAAAAGGTAGTAGTAGTTGTTTCCTTTTTTACA
AAAGTGGAAGATTCTGTTTTTTTGCTTCTGATCAATATTTTTTTTACCGAACAACGAAGTTTGTC
GAGTCATCTCGGGATACTTTTCTCGTCAGATTTCCGACGAAAACTGTTTATACACGAAGGACAAC
GAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAAGGCGGCCATTCGGAGACAGCGACGCAGAGACTT
GAAGCGGGCCCAGCTTGCTGAACTCGCCGGATTTTTCCTGCTCAAAAACAAGACGGGCAAGTGTA
CGAGACTATCCGGCTATCTTCCCAGCGGCGCCATGGCCCCCGCTAACACCACGCAGTATCTGATG
AGCAACGTCATGGAGTCAGACTCGGATTTCGATGACTGTCTTGCGTTTCAACAGAGGAACTTCGA
GGAAGCTTTCGACCTCGTCTAGAAACTGGAATCTGGTCTACGTGGCCTAGTGAAACAGCGCTCGT
CTCTACAGTAGTTACGTCACGAGGACATGTGCTAAAGCGGCGCTTTGGACGCTTCCCATCCACTA
GGGGGCGCTCTGTCGCTGCGTGGCGTCACTCACAGGAATCAGCGGCACGCCACTCGAGTTGTGGG
TCCC

Contig information - 5
Name Contig5
Clone count 5 clones
Length 912
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit hypothetical protein LOC66716 [Mus musculus]
Score 96
Evalue 0.11374
Detail
Sequence [Download: FASTA]
>Contig5
GATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTTTTT
GGAGACTTTTAGTCGATTTATTGTTTTTTTTTTAAAAGGTAGTAGTAGTTGTTTCCTTTTTTACA
AAAGTGGAAGATTCTGTTTTTTTGCTTCTGATCAATATTTTTTTTACCGAACAACGAAGTTTGTC
GAGTCATCTCGGGATACTTTTCTCGTCAGATTTCCGACGAAAACTGTTTATACACGAAGGACAAC
GAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAAGGCGGCCATTCGGAGACAGCGACGCAGAGACTT
GAAGCGGGCCCAGCTTGCTGAACTCGCCGGATTTTTCCTGCTCAAAAACAAGACGGGCAAGTGTA
CGAGACTATCCGGCTATCTTCCCAGCGGCGCCATGGCCCCCGCTAACACCACGCAGTATCTGATG
AGCAACGTGTACGAAGACATGCAGTTGGACCGTCCAATGGACGTTGTTCCGCCTGTTTTACACAA
AACCAACGCTCTCAAAGGAACTTCGAGGAAGCTTTCGACCTCGTCTAGAAACTGGAATCTGGTCT
ACGTGGCCTAGTGAAACAGCGCTCGTCTCTACAGTAGTTACGTCACGAGGACATGTGCTAAAGCG
GCGCTTTGGACGCTTCCCATCCACTAGGGGGCGCTCTGTCGCTGCGTGGCGTCACTCACAGGAAT
CAGCGGCACGCCACTCGAGTTGTGGGTCCCGCCCGAGGGTTATGGGCTCAAGGTCGCCCCTGCCG
GCTGAGAGAGGGATTACAGAGCAACGTTGCCTGACTCTTTGTGACGTCGCCTACTTTCCTAAAGC
TGGACTGGAGGTTGTGACATCGACATATTTAATTAAATGTAAATAAAAATAATCTGTACAATAAA
AG

Contig information - 6
Name Contig6
Clone count 7 clones
Length 811
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit hypothetical protein CLOSS21_00425 [Clostridium sp. SS2/1]
Score 96
Evalue 0.0935297
Detail
Sequence [Download: FASTA]
>Contig6
GGACATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTT
TTTGGAGACTTTTAGTCGATTTATTGTTTTTTTTTTAAAAGGTAGTAGTAGTTGTTTCCTTTTTT
ACAAAAGTGGAAGATTCTGTTTTTTTGCTTCTGATCAATATTTTTTTTACCGAACAACGAAGTTT
GTCGAGTCATCTCGGGATACTTTTCTCGTCAGATTTCCGACGAAAACTGGTGGGCATGTGCAGAA
AAAACATGGAAACATCAACAACTATCAAGACCGACTTTCTTCAATCTACTAAACACGAGTGTAAA
CTTTTCAGTTTATACACGAAGGACAACGAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAAGGCGGC
CATTCGGAGACAGCGACGCAGAGACTTGAAGCGGGCCCAGCTTGCTGAACTCGCCGGATTTTTCC
TGCTCAAAAACAAGACGGGCAAGTGTACGAGACTATCCGGCTATCTTCCCAGCGGCGCCATGGCC
CCCGCTAACACCACGCAGTATCTGATGAGCAACGTGTACGAAGACATGCAGTTGGACCGTCCAAT
GGACGTTGTTCCGCCTGTTTTACACAAAACCAACGCTCTCAAAGGAACTTCGAGGAAGCTTTCGA
CCTCGTCTAGAAACTGGAATCTGGTCTACGTGGCCTAGTGAAAACAGCGCTCGTCTCTACAGTAG
TTACGTCACGAGGACATGTGCTAAAGCGGCGCTTTGGACGCTTCCCATCCACTAGGGGGCGCTCT
GTCGCTGCGTGGCGTCACTCACAGGAATCAG

Contig information - 7
Name Contig7
Clone count 14 clones
Length 843
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit PREDICTED: hypothetical protein [Danio rerio]
Score 111
Evalue 0.00180853
Detail
Sequence [Download: FASTA]
>Contig7
TTGATATTTTCTGTGGCGATAGTCGAAGGCAGGTCGTCGTGCTTTTACGGCGTACTTCTTTGTTT
TTGGAGACTTTTAGTCGATTTATTGTTTTTTTTTTTAAAAGGTAGTAGTAGTTGTTTCCTTTTTT
ACAAAAGTGGAAGATTCTGTTTTTTTGCTTCTGATCAATATTTTTTTTACCGAACAACGAAGTTT
GTCGAGTCATCTCGGGATACTTTTCTCGTCAGATTTCCGACGAAAACTGTTTATACACGAAGGAC
AACGAGGCCTTCAAGCCCCAGCGCCTCCCAAGTAAGGCGGCCATTCGGAGACAGCGACGCAGAGA
CTTGAAGCGGGCCCAGCTTGCTGAACTCGCCGGATTTTTCCTGCTCAAAAACAAGACGGGCAAGT
GTACGAGACTATCCGGCTATCTTCCCAGCGGCGCCATGGCCCCCGCTAACACCACGCAGTATCTG
ATGAGCAACGTGTACGAAGACATGCAGTTGGACCGTCCAATGGACGTTGTTCCGCCTGTTTTACA
CAAAACCAACGCTCTCAAGTACAGCGACTGCTTGTCTCCTCACAGCATGGAGTCAGACTCGGATT
TCGATGACTGTCTTGCGTTTCAACAGAGGAACTTCGAGGAAGCTTTCGACCTCGTCTAGAAACTG
GAATCTGGTCTACGTGGCCTAGTGAAACAGCGCTCGTCTCTACAGTAGTTACGTCACGAGGACAT
GTGCTAAAGCGGCGCTTTGGACGCTTCCCATCCACTAGGGGGCGCTCTGTCGCTGCGTGGCGTCA
CTCACAGGAATCAGCGGCACGCCACTCGAGTTGTGGGTCCCGCCCGAGGGTTATGGGCTCAAG

Contig information - 8
Name Contig8
Clone count 78 clones
Length 971
Assemble Result Assemble Viewer
Homology(BLAST)
Top Hit PREDICTED: hypothetical protein [Danio rerio]
Score 111
Evalue 0.00232107
Detail
Sequence [Download: FASTA]
>Contig8
GGGTTCAAAGACGTGAGTGGTACGTTGAACGACATATTTTCTGTGGCGATAGTCGAAGGCAGGTC
GTCGTGCTTTTACGGCGTACTTCTTTGTTTTTGGAGACTTTTAGTCGATTTATTGTTTTTTTTTT
TAAAAGGTAGTAGTAGTTGTTTCCTTTTTTACAAAAGTGGAAGATTCTGTTTTTTTTGCTTCTGA
TCAATATTTTTTTTACCGAACAACGAAGTTTGTCGAGTCATCTCGGGATACTTTTCTCGTCAGAT
TTCCGACGAAAACTGGTGGGCATGTGCAGAAAAAACATGGAAACATCAACAACTATCAAGACCGA
CTTTCTTCAATCTACTAAACACGAGTGTAAACTTTTCAGTTTATACACGAAGGACAACGAGGCCT
TCAAGCCCCAGCGCCTCCCAAGTAAGGCGGCCATTCGGAGACAGCGACGCAGAGACTTGAAGCGG
GCCCAGCTTGCTGAACTCGCCGGATTTTTCCTGCTCAAAAACAAGACGGGCAAGTGTACGAGACT
ATCCGGCTATCTTCCCAGCGGCGCCATGGCCCCCGCTAACACCACGCAGTATCTGATGAGCAACG
TGTACGAAGACATGCAGTTGGACCGTCCAATGGACGTTGTTCCGCCTGTTTTACACAAAACCAAC
GCTCTCAAGTACAGCGACTGCTTGTCTCCTCACAGCATGGAGTCAGACTCGGATTTCGATGACTG
TCTTGCGTTTCAACAGAGGAACTTCGAGGAAGCTTTCGACCTCGTCTAGAAACTGGAATCTGGTC
TACGTGGCCTAGTGGAAACAGCGCTCGTCTCTACAGTAGTTACGTCACGAGGACATGTGCTAAAG
CGGCGCTTTGGACGCTTCCCATCCACTAGGGGGCGCTCTGTCGCTGCGTGGCGTCACTCACAGGA
ATCAGCGGCACGCCACTCGAGTTGTGGGTCCCGCCCGAGGGTTATGGGGCTCAAGGTAAAC
/medaka