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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9735R-6 
 Symbol Aats-trp  Full Name Tryptophanyl-tRNA synthetase 
 CG No CG9735  Old CG No CG9735 
 Synonyms CG9735, WRS-85D, TrpRS, 85D-WRS, l(3)3559, l(3)03560, l(3)03559, WRS, Aats-trp 
 Accession No (Link to NCBI) NM_169264.1 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Arsham AM, Neufeld TP.
A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway.
PLoS One (2009) 4(6) e6068 [ PubMed ID = 19562034 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGTGGAGGCGTTGACACTAAAT 
 Primer Seq. 3'
aatctagaggtaccTCACGTCCAAGCTTGATGGCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GTGGAGGGCG TTGACACTAA ATGGAAAACC GGACGCAGAA CCCGTGGAAA CGGGCACGGA 
0061 TGCCCAGGCA CAGGAGGGAG CCACTGCACC CACTGAAGAT GTTGTGGATC CATGGAATGT 
0121 GGCCAGTAGT AATGACGCGG GCGTCGACTA TGATAAGCTG ATAAAACGGT TTGGCTCCAG 
0181 CAAAATCGAT GAGGAGCTTA TCGCGCGTTT CGAGAAAATC ACGGGAAAGC CCGCCCACCA 
0241 CTTCATCCGA AGGGGCATGT TCTTCTCGCA CCGGGATCTT CATACGATTC TAACACTGCG 
0301 CGAACAGGGC AAACCCTTCT ATTTGTACAC TGGTCGCGGT CCCAGTTCCG GATCCCTGCA 
0361 CGTGGGCCAC CTGGTGCCCT TCATCATGAC CAAGTGGCTG CAGGAGACCT TTGATGTGCC 
0421 TGCTAGTTAT TCAATTGACC GACGACGAGA AGACCTTGTG GAAGGATCTG AAAGTGGAGG 
0481 ATGCCATCAA GCTTGGACGT GA 
 in silico PCR Fragment
0001 GTGGA-GGCG TTGACACTAA ATGGAAAACC GGACGCAGAA CCCGTGGAAA CGGGCACGGA 
0061 TGCCCAGGCA CAGGAGGGAG CCACTGCACC CACTGAAGAT GTTGTGGATC CATGGAATGT 
0121 GGCCAGTAGT AATGACGCGG GCGTCGACTA TGATAAGCTG ATAAAACGGT TTGGCTCCAG 
0181 CAAAATCGAT GAGGAGCTTA TCGCGCGTTT CGAGAAAATC ACGGGAAAGC CCGCCCACCA 
0241 CTTCATCCGA AGGGGCATGT TCTTCTCGCA CCGGGATCTT CATACGATTC TAACACTGCG 
0301 CGAACAGGGC AAACCCTTCT ATTTGTACAC TGGTCGCGGT CCCAGTTCCG GATCCCTGCA 
0361 CGTGGGCCAC CTGGTGCCCT TCATCATGAC CAAGTGGCTG CAGGAGACCT TTGATGTG-C 
0421 CGCTGGTTAT TCAATTGACC GACGACGAGA AGACCTTGTG GAAGGATCTG AAAGTGGAGG 
0481 ATGCCATCAA GCTTGGACGT GA 
 Assemble Data

9735R-6.IR_full       1   GTGGAGGGCGTTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACGGGCACGGA 60
                          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     1   GTGGA-GGCGTTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACGGGCACGGA 60


9735R-6.IR_full       61  TGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGTTGTGGATCCATGGAATGT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     61  TGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGTTGTGGATCCATGGAATGT 120


9735R-6.IR_full       121 GGCCAGTAGTAATGACGCGGGCGTCGACTATGATAAGCTGATAAAACGGTTTGGCTCCAG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     121 GGCCAGTAGTAATGACGCGGGCGTCGACTATGATAAGCTGATAAAACGGTTTGGCTCCAG 180


9735R-6.IR_full       181 CAAAATCGATGAGGAGCTTATCGCGCGTTTCGAGAAAATCACGGGAAAGCCCGCCCACCA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     181 CAAAATCGATGAGGAGCTTATCGCGCGTTTCGAGAAAATCACGGGAAAGCCCGCCCACCA 240


9735R-6.IR_full       241 CTTCATCCGAAGGGGCATGTTCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     241 CTTCATCCGAAGGGGCATGTTCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCG 300


9735R-6.IR_full       301 CGAACAGGGCAAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGATCCCTGCA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     301 CGAACAGGGCAAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGATCCCTGCA 360


9735R-6.IR_full       361 CGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCAGGAGACCTTTGATGTGCC 420
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
9735R-6.in silico     361 CGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCAGGAGACCTTTGATGTG-C 420


9735R-6.IR_full       421 TGCTAGTTATTCAATTGACCGACGACGAGAAGACCTTGTGGAAGGATCTGAAAGTGGAGG 480
                           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-6.in silico     421 CGCTGGTTATTCAATTGACCGACGACGAGAAGACCTTGTGGAAGGATCTGAAAGTGGAGG 480


9735R-6.IR_full       481 ATGCCATCAAGCTTGGACGTGA 502
                          ||||||||||||||||||||||
9735R-6.in silico     481 ATGCCATCAAGCTTGGACGTGA 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_169264.1  CG9735-RA, transcript variant A (Aats-trp), mRNA 
100   482  NM_080087.2  CG9735-RB, transcript variant B (Aats-trp), mRNA 
0   NM_135238.2  CG10354-RA (CG10354), mRNA 
0   NM_057625.3  CG9847-RA, transcript variant A (Fkbp13), mRNA 
0   NM_166452.1  CG9847-RB, transcript variant B (Fkbp13), mRNA 
0   NM_165920.1  CG17759-RB, transcript variant B (Galpha49B), mRNA 
0   NM_078994.2  CG17759-RH, transcript variant H (Galpha49B), mRNA 
0   NM_165922.1  CG17759-RE, transcript variant E (Galpha49B), mRNA 
0   NM_165921.1  CG17759-RC, transcript variant C (Galpha49B), mRNA 
0   NM_165923.1  CG17759-RG, transcript variant G (Galpha49B), mRNA 
0   NM_165919.1  CG17759-RA, transcript variant A (Galpha49B), mRNA 
0   NM_136954.2  CG8594-RA (CG8594), mRNA 
0   NM_138090.1  CG12252-RA (CG12252), mRNA 
0   NM_139732.2  CG10542-RA (CG10542), mRNA 
0   NM_079684.3  CG4510-RA (Surf6), mRNA 
0   NM_134810.2  CG15385-RA (CG15385), mRNA 
0   NM_142781.2  CG13850-RA (CG13850), mRNA 
0   NM_167132.1  CG2175-RB, transcript variant B (dec-1), mRNA 
0   NM_167133.1  CG2175-RC, transcript variant C (dec-1), mRNA 
0   NM_078517.2  CG2175-RA, transcript variant A (dec-1), mRNA 
0   NM_080169.2  CG2723-RA (ImpE3), mRNA 
0   NM_132990.2  CG8557-RA, transcript variant A (CG8557), mRNA 
0   NM_176751.1  CG8557-RB, transcript variant B (CG8557), mRNA 
0   28  NM_168104.1  CG32237-RA (CG32237), mRNA 
0   NM_134686.1  CG11838-RA, transcript variant A (Oseg3), mRNA 
0   NM_205886.1  CG11838-RB, transcript variant B (Oseg3), mRNA 
0   NM_165031.1  CG31728-RA (CG31728), mRNA 
0   11  NM_176223.2  CG30115-RD, transcript variant D (CG30115), mRNA 
0   NM_170401.1  CG11901-RB, transcript variant B (Ef1gamma), mRNA 
0   NM_143743.1  CG11901-RA, transcript variant A (Ef1gamma), mRNA 

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