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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
9735R-2 |
Symbol |
Aats-trp |
Full Name |
Tryptophanyl-tRNA synthetase |
CG No |
CG9735 |
Old CG No |
CG9735 |
Synonyms |
CG9735, WRS-85D, TrpRS, 85D-WRS, l(3)3559, l(3)03560, l(3)03559, WRS, Aats-trp |
Accession No (Link to NCBI) |
NM_169264.1 |
Inserted Chr. |
X |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
Arsham AM, Neufeld TP. A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway. PLoS One (2009) 4(6) e6068
[
PubMed ID = 19562034
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGTGGAGGCGTTGACACTAAAT |
Primer Seq. 3' |
aatctagaggtaccTCACGTCCAAGCTTGATGGCA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GTGGAGGGCG TTGACACTAA ATGGAAAACC GGACGCAGAA CCCGTGGAAA CGGGCACGGA
0061 TGCCCAGGCA CAGGAGGGAG CCACTGCACC CACTGAAGAT GTTGTGGATC CATGGAATGT
0121 GGCCAGTAGT AATGACGCGG GCGTCGACTA TGATAAGCTG ATAAAACGGT TTGGCTCCAG
0181 CAAAATCGAT GAGGAGCTTA TCGCGCGTTT CGAGAAAATC ACGGGAAAGC CCGCCCACCA
0241 CTTCATCCGA AGGGGCATGT TCTTCTCGCA CCGGGATCTT CATACGATTC TAACACTGCG
0301 CGAACAGGGC AAACCCTTCT ATTTGTACAC TGGTCGCGGT CCCAGTTCCG GATCCCTGCA
0361 CGTGGGCCAC CTGGTGCCCT TCATCATGAC CAAGTGGCTG CAGGAGACCT TTGATGTGCC
0421 TGCTAGTTAT TCAATTGACC GACGACGAGA AGACCTTGTG GAAGGATCTG AAAGTGGAGG
0481 ATGCCATCAA GCTTGGACGT GA |
in silico PCR Fragment |
0001 GTGGA-GGCG TTGACACTAA ATGGAAAACC GGACGCAGAA CCCGTGGAAA CGGGCACGGA
0061 TGCCCAGGCA CAGGAGGGAG CCACTGCACC CACTGAAGAT GTTGTGGATC CATGGAATGT
0121 GGCCAGTAGT AATGACGCGG GCGTCGACTA TGATAAGCTG ATAAAACGGT TTGGCTCCAG
0181 CAAAATCGAT GAGGAGCTTA TCGCGCGTTT CGAGAAAATC ACGGGAAAGC CCGCCCACCA
0241 CTTCATCCGA AGGGGCATGT TCTTCTCGCA CCGGGATCTT CATACGATTC TAACACTGCG
0301 CGAACAGGGC AAACCCTTCT ATTTGTACAC TGGTCGCGGT CCCAGTTCCG GATCCCTGCA
0361 CGTGGGCCAC CTGGTGCCCT TCATCATGAC CAAGTGGCTG CAGGAGACCT TTGATGTG-C
0421 CGCTGGTTAT TCAATTGACC GACGACGAGA AGACCTTGTG GAAGGATCTG AAAGTGGAGG
0481 ATGCCATCAA GCTTGGACGT GA |
Assemble Data |
9735R-2.IR_full 1 GTGGAGGGCGTTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACGGGCACGGA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 1 GTGGA-GGCGTTGACACTAAATGGAAAACCGGACGCAGAACCCGTGGAAACGGGCACGGA 60
9735R-2.IR_full 61 TGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGTTGTGGATCCATGGAATGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 61 TGCCCAGGCACAGGAGGGAGCCACTGCACCCACTGAAGATGTTGTGGATCCATGGAATGT 120
9735R-2.IR_full 121 GGCCAGTAGTAATGACGCGGGCGTCGACTATGATAAGCTGATAAAACGGTTTGGCTCCAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 121 GGCCAGTAGTAATGACGCGGGCGTCGACTATGATAAGCTGATAAAACGGTTTGGCTCCAG 180
9735R-2.IR_full 181 CAAAATCGATGAGGAGCTTATCGCGCGTTTCGAGAAAATCACGGGAAAGCCCGCCCACCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 181 CAAAATCGATGAGGAGCTTATCGCGCGTTTCGAGAAAATCACGGGAAAGCCCGCCCACCA 240
9735R-2.IR_full 241 CTTCATCCGAAGGGGCATGTTCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 241 CTTCATCCGAAGGGGCATGTTCTTCTCGCACCGGGATCTTCATACGATTCTAACACTGCG 300
9735R-2.IR_full 301 CGAACAGGGCAAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGATCCCTGCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 301 CGAACAGGGCAAACCCTTCTATTTGTACACTGGTCGCGGTCCCAGTTCCGGATCCCTGCA 360
9735R-2.IR_full 361 CGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCAGGAGACCTTTGATGTGCC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
9735R-2.in silico 361 CGTGGGCCACCTGGTGCCCTTCATCATGACCAAGTGGCTGCAGGAGACCTTTGATGTG-C 420
9735R-2.IR_full 421 TGCTAGTTATTCAATTGACCGACGACGAGAAGACCTTGTGGAAGGATCTGAAAGTGGAGG 480
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
9735R-2.in silico 421 CGCTGGTTATTCAATTGACCGACGACGAGAAGACCTTGTGGAAGGATCTGAAAGTGGAGG 480
9735R-2.IR_full 481 ATGCCATCAAGCTTGGACGTGA 502
||||||||||||||||||||||
9735R-2.in silico 481 ATGCCATCAAGCTTGGACGTGA 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_169264.1 |
CG9735-RA, transcript variant A (Aats-trp), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_080087.2 |
CG9735-RB, transcript variant B (Aats-trp), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_135238.2 |
CG10354-RA (CG10354), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_057625.3 |
CG9847-RA, transcript variant A (Fkbp13), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_166452.1 |
CG9847-RB, transcript variant B (Fkbp13), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_165920.1 |
CG17759-RB, transcript variant B (Galpha49B), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_078994.2 |
CG17759-RH, transcript variant H (Galpha49B), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_165922.1 |
CG17759-RE, transcript variant E (Galpha49B), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_165921.1 |
CG17759-RC, transcript variant C (Galpha49B), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_165923.1 |
CG17759-RG, transcript variant G (Galpha49B), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_165919.1 |
CG17759-RA, transcript variant A (Galpha49B), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_136954.2 |
CG8594-RA (CG8594), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_138090.1 |
CG12252-RA (CG12252), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_139732.2 |
CG10542-RA (CG10542), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_079684.3 |
CG4510-RA (Surf6), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_134810.2 |
CG15385-RA (CG15385), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_142781.2 |
CG13850-RA (CG13850), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_167132.1 |
CG2175-RB, transcript variant B (dec-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_167133.1 |
CG2175-RC, transcript variant C (dec-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_078517.2 |
CG2175-RA, transcript variant A (dec-1), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_080169.2 |
CG2723-RA (ImpE3), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_132990.2 |
CG8557-RA, transcript variant A (CG8557), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_176751.1 |
CG8557-RB, transcript variant B (CG8557), mRNA |
0 |
0 |
0 |
9 |
28 |
NM_168104.1 |
CG32237-RA (CG32237), mRNA |
0 |
0 |
0 |
7 |
4 |
NM_134686.1 |
CG11838-RA, transcript variant A (Oseg3), mRNA |
0 |
0 |
0 |
7 |
4 |
NM_205886.1 |
CG11838-RB, transcript variant B (Oseg3), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_165031.1 |
CG31728-RA (CG31728), mRNA |
0 |
0 |
0 |
5 |
11 |
NM_176223.2 |
CG30115-RD, transcript variant D (CG30115), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_170401.1 |
CG11901-RB, transcript variant B (Ef1gamma), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_143743.1 |
CG11901-RA, transcript variant A (Ef1gamma), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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++ |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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++ |
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VB |
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++ |
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Dcompartment |
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Penetrance |
++ |
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- |
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