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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7903R-1 
 Symbol CG7903  Full Name CG7903 
 CG No CG7903  Old CG No CG7903 
 Synonyms cg7903, CG7903 
 Accession No (Link to NCBI) NM_143498.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Olesnicky EC, Killian DJ, Garcia E, Morton MC, Rathjen AR, Sola IE, Gavis ER.
Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis.
G3 (Bethesda) (2014) 4(2) 297-306 [ PubMed ID = 24347626 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGAGAACACGGACATGGCGGAG 
 Primer Seq. 3' 
aatctagaggtaccCCAGGCTGTGGTCCACTGTTG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GAGAACACGG ACATGGCGGA GGCGGCCANT CGCAGCGCTG AATGGCACCA TCTTCAAGGG 
0061 CCAGCCCATT GTGGTGGAGG CGGGCAGGCC AAAGTACGGC CCGGGAGGTG GCAGTCGAGG 
0121 ACAACAGGGC TCTGGTGACA ATCCGGGGCG CAGGCCCTCG CAGGTTCAAG GTGGCGGGGC 
0181 GGACAAGAGA CCTCATGAAT CCAATACCAA CTTCAAGCGC AACTTTCGTG AGGAAGTCGG 
0241 TGGCAGATTC TCCAACGAAG GCCCAAGGAG CTCCAACTCC TCGGCCGCCA AATTTGGTCC 
0301 CGTGAGAAAC GAGTCCAACT ACAGACAACA GCGCAGTGCT CCATATTCGA AAGGACCACC 
0361 GAACAATGAG TCTTCCAATC AGGGACAGGG CTTTAGGAAC AAATTTGCAG GCGGAGGCAA 
0421 GTTCGGTGGA AGCGCGGGCA ACGAGGGACG CTTCGGCAGC AATCGGTTTC AGCAGCGGGA 
0481 CAACAGTGGA CCACAGCCTG G 
 in silico PCR Fragment 
0001 GAGAACACGG ACATGGCGGA GGCGGCCA-T CGCAGCGCTG AATGGCACCA TCTTCAAGGG 
0061 CCAGCCCATT GTGGTGGAGG CGGGCAGGCC AAAGTACGGC CCGGGAGGTG GCAGTCGAGG 
0121 TCAGCCGGGC TCTGGGGACA ATCCGGGGCG CAGGCCCTCG CAGGTTCAAG GTGGCGGGGC 
0181 GGACAAGAGA CCTCATGAAT CCAATACCAA CTTCAAGCGC AACTTTCGTG AGGAAGTCGG 
0241 TGGCAGATTC TCCAACGAAG GCCCAAGGAG CTCGAACTCC TCGGCCGCCA AATTTGGTCC 
0301 CGTGAGAAAC GAGTCCAACT ACAGACAACA GCGCAGTGCT CCATACTCGA AAGGACCACC 
0361 GAACAATGAG TCTTCCAATC AGGGACAGGG CTTTAGGAAC AAATTTGCAG GCGGAGGCAA 
0421 GTTCGGTGGA AGCGCGGGCA ACGAGGGACG CTTCGGCAGC AATCGGTTTC AGCAGCGGGA 
0481 CAACAGTGGA CCACAGCCTG G 
 Assemble Data 

7903R-1.IR_full       1   GAGAACACGGACATGGCGGAGGCGGCCANTCGCAGCGCTGAATGGCACCATCTTCAAGGG 60
                          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
7903R-1.in silico     1   GAGAACACGGACATGGCGGAGGCGGCCA-TCGCAGCGCTGAATGGCACCATCTTCAAGGG 60


7903R-1.IR_full       61  CCAGCCCATTGTGGTGGAGGCGGGCAGGCCAAAGTACGGCCCGGGAGGTGGCAGTCGAGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7903R-1.in silico     61  CCAGCCCATTGTGGTGGAGGCGGGCAGGCCAAAGTACGGCCCGGGAGGTGGCAGTCGAGG 120


7903R-1.IR_full       121 ACAACAGGGCTCTGGTGACAATCCGGGGCGCAGGCCCTCGCAGGTTCAAGGTGGCGGGGC 180
                           || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
7903R-1.in silico     121 TCAGCCGGGCTCTGGGGACAATCCGGGGCGCAGGCCCTCGCAGGTTCAAGGTGGCGGGGC 180


7903R-1.IR_full       181 GGACAAGAGACCTCATGAATCCAATACCAACTTCAAGCGCAACTTTCGTGAGGAAGTCGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7903R-1.in silico     181 GGACAAGAGACCTCATGAATCCAATACCAACTTCAAGCGCAACTTTCGTGAGGAAGTCGG 240


7903R-1.IR_full       241 TGGCAGATTCTCCAACGAAGGCCCAAGGAGCTCCAACTCCTCGGCCGCCAAATTTGGTCC 300
                          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
7903R-1.in silico     241 TGGCAGATTCTCCAACGAAGGCCCAAGGAGCTCGAACTCCTCGGCCGCCAAATTTGGTCC 300


7903R-1.IR_full       301 CGTGAGAAACGAGTCCAACTACAGACAACAGCGCAGTGCTCCATATTCGAAAGGACCACC 360
                          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
7903R-1.in silico     301 CGTGAGAAACGAGTCCAACTACAGACAACAGCGCAGTGCTCCATACTCGAAAGGACCACC 360


7903R-1.IR_full       361 GAACAATGAGTCTTCCAATCAGGGACAGGGCTTTAGGAACAAATTTGCAGGCGGAGGCAA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7903R-1.in silico     361 GAACAATGAGTCTTCCAATCAGGGACAGGGCTTTAGGAACAAATTTGCAGGCGGAGGCAA 420


7903R-1.IR_full       421 GTTCGGTGGAAGCGCGGGCAACGAGGGACGCTTCGGCAGCAATCGGTTTCAGCAGCGGGA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7903R-1.in silico     421 GTTCGGTGGAAGCGCGGGCAACGAGGGACGCTTCGGCAGCAATCGGTTTCAGCAGCGGGA 480


7903R-1.IR_full       481 CAACAGTGGACCACAGCCTGG 501
                          |||||||||||||||||||||
7903R-1.in silico     481 CAACAGTGGACCACAGCCTGG 501



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  2  NM_143498.2  CG7903-RA (CG7903), mRNA 
0.41   2  2  2  3  NM_143760.2  CG32464-RB, transcript variant B (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_169039.2  CG32464-RL, transcript variant L (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_001043213.1  CG32464-RP, transcript variant P (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_001031977.1  CG32464-RN, transcript variant N (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_169038.1  CG32464-RJ, transcript variant J (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_206429.1  CG32464-RG, transcript variant G (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_170640.2  CG32464-RK, transcript variant K (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_001043214.1  CG32464-RO, transcript variant O (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_001031978.1  CG32464-RM, transcript variant M (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_170641.1  CG32464-RF, transcript variant F (l(3)82Fd), mRNA 
0.41   2  2  2  3  NM_169047.1  CG32464-RD, transcript variant D (l(3)82Fd), mRNA 
0   0  4  4  3  NM_140008.1  CG5741-RA (CG5741), mRNA 
0   0  1  10  3  NM_143702.2  CG5889-RA (Mdh), mRNA 
0   0  1  5  9  NM_167865.1  CG32333-RA, transcript variant A (CG32333), mRNA 
0   0  1  4  7  NM_206799.1  CG18000-RL, transcript variant L (sw), mRNA 
0   0  1  4  7  NM_206798.1  CG18000-RM, transcript variant M (sw), mRNA 
0   0  1  4  7  NM_057725.3  CG18000-RK, transcript variant K (sw), mRNA 
0   0  1  4  7  NM_057727.4  CG18000-RJ, transcript variant J (sw), mRNA 
0   0  1  4  7  NM_057721.3  CG18000-RD, transcript variant D (sw), mRNA 
0   0  1  4  7  NM_057731.3  CG18000-RF, transcript variant F (sw), mRNA 
0   0  1  4  7  NM_057728.3  CG18000-RC, transcript variant C (sw), mRNA 
0   0  1  4  7  NM_057729.3  CG18000-RB, transcript variant B (sw), mRNA 
0   0  1  4  7  NM_057726.3  CG18000-RA, transcript variant A (sw), mRNA 
0   0  1  4  7  NM_057723.3  CG18000-RH, transcript variant H (sw), mRNA 
0   0  1  4  7  NM_057722.3  CG18000-RG, transcript variant G (sw), mRNA 
0   0  1  4  7  NM_057724.3  CG18000-RI, transcript variant I (sw), mRNA 
0   0  1  4  7  NM_057730.4  CG18000-RE, transcript variant E (sw), mRNA 
0   0  1  4  3  NM_001032184.1  CG33880-RA (His2B:CG33880), mRNA 
0   0  1  4  3  NM_001032154.1  CG33892-RA (His2B:CG33892), mRNA 

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