Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
5557R-2 |
Symbol |
sqz |
Full Name |
squeeze |
CG No |
CG5557 |
Old CG No |
CG5557 |
Synonyms |
CG5557, l(3)02102, anon-WO0118547.697, sqz, Sqz |
Accession No (Link to NCBI) |
NM_079679.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T. DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons. Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Eade KT, Fancher HA, Ridyard MS, Allan DW. Developmental transcriptional networks are required to maintain neuronal subtype identity in the mature nervous system. PLoS Genet (2012) 8(2) e1002501
[
PubMed ID = 22383890
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCCCCAGCGGCGATTATCTGC |
Primer Seq. 3' |
aatctagaggtaccCGTGTGCTGCGACAGGTACGA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TCCCCAGCGG CGATTATCTG CACCGCTCCA TCGATCAGCT GCGTTCGCTG GGTCATCTGA
0061 CCACCGCCCA ATTGGTTCAC GACTACAAGC CCTTCAACAT TAGCGAATTC CGGCAGAATG
0121 TCGCTGAGCG ACTGGACTAC TCGCTGAAGA ACGGCCTGGT GCAGCACCAA CAGCAAATGG
0181 TCATGGAGCG GCAGCCACAT CCCGATCAGC AGCAGCAGCA GCATCTGCAT CACCCGCAAC
0241 AGCAGCAGCA CCCCGCCGCA GCTGAAGGTC AGCTACAGTG CGCCCAACTC GCCGCCCACT
0301 CCACACGAGC AGCAGGAACA GAAGTACGAC CCGAATCGAT CGCCGCCGCG TCAGCAGNAT
0361 GAGCAGCGCT AGCGGCAGTG GCAGCAACGG CTCCTCGCCT GAGGAGGAAA GCCGCCGGGG
0421 AGACGGTGAT CAGGCCAAGC CCTACAAGTG TGGCTCGTGC AGCAAGTCCT TTGCCAACTC
0481 CTCGTACCTG TCGCAGCACA CG |
in silico PCR Fragment |
0001 TCCCCAGCGG CGATTATCTG CACCGCTCCA TCGATCAGCT GCGTTCGCTG GGTCATCTGA
0061 CCACCGCCCA ATTGGTTCAC GACTACAAGC CCTTCAACAT TAGCGAATTC CGGCAGAATG
0121 TCGCTGAGCG ACTGGACTAC TCGCTGAAGA ACGGCCTGGT GCAGCACCAA CAGCAAATGG
0181 TCATGGAGCA GCAGCCACAT CCCGATCAGC AGCAGCAGCA GCATCTGCAT CACCCGCAAC
0241 AGCAGCAGCA -CCCGCCGCA GCTGAAGGTC AGCTACAGTG CGCCCAACTC GCCGCCCACT
0301 CCACACGAGC AGCAGGAACA GAAGTACGAC CCGAATCGAT CGCCGCCGCG TCAGCAG-AT
0361 GAGCAGCGCT AGCGGCAGTG GCAGCAACGG CTCCTCGCCT GAGGAGGAAA GCCGACGGGG
0421 AGACGGTGAT CAGGCCAAGC CCTACAAGTG TGGCTCGTGC AGCAAGTCCT TTGCCAACTC
0481 CTCGTACCTG TCGCAGCACA CG |
Assemble Data |
5557R-2.IR_full 1 TCCCCAGCGGCGATTATCTGCACCGCTCCATCGATCAGCTGCGTTCGCTGGGTCATCTGA 60
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5557R-2.in silico 1 TCCCCAGCGGCGATTATCTGCACCGCTCCATCGATCAGCTGCGTTCGCTGGGTCATCTGA 60
5557R-2.IR_full 61 CCACCGCCCAATTGGTTCACGACTACAAGCCCTTCAACATTAGCGAATTCCGGCAGAATG 120
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5557R-2.in silico 61 CCACCGCCCAATTGGTTCACGACTACAAGCCCTTCAACATTAGCGAATTCCGGCAGAATG 120
5557R-2.IR_full 121 TCGCTGAGCGACTGGACTACTCGCTGAAGAACGGCCTGGTGCAGCACCAACAGCAAATGG 180
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5557R-2.in silico 121 TCGCTGAGCGACTGGACTACTCGCTGAAGAACGGCCTGGTGCAGCACCAACAGCAAATGG 180
5557R-2.IR_full 181 TCATGGAGCGGCAGCCACATCCCGATCAGCAGCAGCAGCAGCATCTGCATCACCCGCAAC 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
5557R-2.in silico 181 TCATGGAGCAGCAGCCACATCCCGATCAGCAGCAGCAGCAGCATCTGCATCACCCGCAAC 240
5557R-2.IR_full 241 AGCAGCAGCACCCCGCCGCAGCTGAAGGTCAGCTACAGTGCGCCCAACTCGCCGCCCACT 300
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5557R-2.in silico 241 AGCAGCAGCA-CCCGCCGCAGCTGAAGGTCAGCTACAGTGCGCCCAACTCGCCGCCCACT 300
5557R-2.IR_full 301 CCACACGAGCAGCAGGAACAGAAGTACGACCCGAATCGATCGCCGCCGCGTCAGCAGNAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
5557R-2.in silico 301 CCACACGAGCAGCAGGAACAGAAGTACGACCCGAATCGATCGCCGCCGCGTCAGCAG-AT 360
5557R-2.IR_full 361 GAGCAGCGCTAGCGGCAGTGGCAGCAACGGCTCCTCGCCTGAGGAGGAAAGCCGCCGGGG 420
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5557R-2.in silico 361 GAGCAGCGCTAGCGGCAGTGGCAGCAACGGCTCCTCGCCTGAGGAGGAAAGCCGACGGGG 420
5557R-2.IR_full 421 AGACGGTGATCAGGCCAAGCCCTACAAGTGTGGCTCGTGCAGCAAGTCCTTTGCCAACTC 480
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5557R-2.in silico 421 AGACGGTGATCAGGCCAAGCCCTACAAGTGTGGCTCGTGCAGCAAGTCCTTTGCCAACTC 480
5557R-2.IR_full 481 CTCGTACCTGTCGCAGCACACG 502
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5557R-2.in silico 481 CTCGTACCTGTCGCAGCACACG 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
18 |
101 |
NM_079679.2 |
CG5557-RA (sqz), mRNA |
1.03 |
5 |
9 |
42 |
130 |
NM_079178.2 |
CG1921-RB, transcript variant B (sty), mRNA |
1.03 |
5 |
9 |
42 |
130 |
NM_168031.1 |
CG1921-RC, transcript variant C (sty), mRNA |
1.03 |
5 |
7 |
20 |
87 |
NM_167374.1 |
CG32632-RB (Tango13), mRNA |
1.03 |
5 |
3 |
13 |
64 |
NM_079616.2 |
CG7771-RA, transcript variant A (sim), mRNA |
1.03 |
5 |
3 |
13 |
64 |
NM_169495.2 |
CG7771-RB, transcript variant B (sim), mRNA |
0.82 |
4 |
6 |
10 |
34 |
NM_165091.1 |
CG31775-RA (CG31775), mRNA |
0.62 |
3 |
28 |
121 |
336 |
NM_079218.2 |
CG10491-RA, transcript variant A (vn), mRNA |
0.62 |
3 |
28 |
121 |
336 |
NM_001014565.1 |
CG10491-RB, transcript variant B (vn), mRNA |
0.62 |
3 |
22 |
61 |
292 |
NM_132235.2 |
CG32717-RB, transcript variant B (sdt), mRNA |
0.62 |
3 |
20 |
95 |
249 |
NM_134763.1 |
CG14351-RA (CG14351), mRNA |
0.62 |
3 |
3 |
15 |
46 |
NM_167022.1 |
CG32771-RA (CG32771), mRNA |
0.41 |
2 |
26 |
90 |
303 |
NM_078601.2 |
CG9533-RA (rut), mRNA |
0.41 |
2 |
22 |
54 |
155 |
NM_206750.1 |
CG15603-RA (CG15603), mRNA |
0.41 |
2 |
17 |
73 |
224 |
NM_132351.1 |
CG1343-RA, transcript variant A (Sp1), mRNA |
0.41 |
2 |
17 |
73 |
224 |
NM_167200.1 |
CG1343-RB, transcript variant B (Sp1), mRNA |
0.41 |
2 |
16 |
52 |
209 |
NM_143745.2 |
CG18389-RA (Eip93F), mRNA |
0.41 |
2 |
15 |
84 |
323 |
NM_166873.1 |
CG3638-RB, transcript variant B (CG3638), mRNA |
0.41 |
2 |
15 |
84 |
323 |
NM_166872.1 |
CG3638-RD, transcript variant D (CG3638), mRNA |
0.41 |
2 |
15 |
84 |
323 |
NM_130541.3 |
CG3638-RC, transcript variant C (CG3638), mRNA |
0.41 |
2 |
15 |
84 |
323 |
NM_166874.1 |
CG3638-RA, transcript variant A (CG3638), mRNA |
0.41 |
2 |
15 |
61 |
195 |
NM_001014681.1 |
CG33553-RD, transcript variant D (Doa), mRNA |
0.41 |
2 |
15 |
61 |
195 |
NM_001043298.1 |
CG33553-RH, transcript variant H (Doa), mRNA |
0.41 |
2 |
15 |
60 |
185 |
NM_001014679.1 |
CG33553-RC, transcript variant C (Doa), mRNA |
0.41 |
2 |
15 |
41 |
210 |
NM_206653.1 |
CG32717-RE, transcript variant E (sdt), mRNA |
0.41 |
2 |
15 |
41 |
210 |
NM_132236.3 |
CG32717-RA, transcript variant A (sdt), mRNA |
0.41 |
2 |
14 |
57 |
283 |
NM_170094.2 |
CG13598-RA, transcript variant A (sba), mRNA |
0.41 |
2 |
14 |
57 |
281 |
NM_176549.1 |
CG13598-RB, transcript variant B (sba), mRNA |
0.41 |
2 |
13 |
65 |
175 |
NM_001032408.1 |
CG33956-RD, transcript variant D (kay), mRNA |
0.41 |
2 |
13 |
57 |
209 |
NM_136477.2 |
CG30497-RA, transcript variant A (CG30497), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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Dcompartment |
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Penetrance |
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- |
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