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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
5263R-2 |
Symbol |
smg |
Full Name |
smaug |
CG No |
CG5263 |
Old CG No |
CG5263 |
Synonyms |
Smg, unnamed, D69, anonD69, anon-D69, CG5263, smg, SMG |
Accession No (Link to NCBI) |
NM_079263.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Park J, Lee J, Kim JH, Lee J, Park H, Lim C. ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD. Nucleic Acids Res (2021) 49(19) 11294-11311
[
PubMed ID = 34551427
]
[
RRC reference
]
Olesnicky EC, Killian DJ, Garcia E, Morton MC, Rathjen AR, Sola IE, Gavis ER. Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis. G3 (Bethesda) (2014) 4(2) 297-306
[
PubMed ID = 24347626
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCGGCATCAGCGGCCAAACCAA |
Primer Seq. 3' |
aatctagaggtaccTGCCGTAGCATGGCATCGAGT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CGGCATCAGC GGCCAAACCA ATAACTCTAA CAGTGCATCC AACGAGATGC AGCCAACCAC
0061 ATCAACGCCT ACTGCAGCCC ACAAGGAGGC CACATCAACG GCCACGACGA CGGCGACATA
0121 CGCCAATGGC AATCCCAATT CTAACGCCAA TCCCAGCCAG AGCCAGCCGT CCAATGCGCT
0181 GTTTTGCGAG CAGGTGACCA CAGTGACAAA TCTCTTCGAG AAGTGGAACG ACTGCGAGCG
0241 AACCGTCGTG ATGTACGCGC TGCTCAAGCG GCTGCGCTAC CCGAGCCTCA AGTTTCTACA
0301 GTATTCTATC GACAGCAACC TGACCCAGAA CCTGGGCACC TCGCAGACCA ATCTGAGCAG
0361 CGTGGTTATT GACATCAATG CCAACAATCC GGTGTACCTG CAGAATCTAC TCAACGCCTA
0421 CAAGACGTTC CAGCCATGTG ACCTGCTCGA CGCCATGTCC TCCTCGTCGT CCGACAAAGA
0481 CTCGATGCCA TGCTACGGCA |
in silico PCR Fragment |
0001 CGGCATCAGC GGCCAAACCA ATAACTCTAA CAGTGCATCC AACGAGATGC AGCCAACCAC
0061 ATCAACGCCT ACTGCAGCCC ACAAGGAGGC CACATCAACG GCCACGACGA CGGCGACATA
0121 CGCCAATGGC AATCCCAATT CTAACGCCAA TCCCAGCCAG AGCCAGCCGT CCAATGCGCT
0181 GTTTTGCGAG CAGGTGACCA CAGTGACAAA TCTCTTCGAG AAGTGGAACG ACTGCGAGCG
0241 AACCGTCGTG ATGTACGCGC TGCTCAAGCG GCTGCGCTAC CCGAGCCTCA AGTTTCTACA
0301 GTATTCTATC GACAGCAACC TGACCCAGAA CCTGGGCACC TCCCAGACCA ATCTGAGCAG
0361 CGTGGTTATT GACATCAATG CCAACAATCC GGTGTACCTG CAGAATCTAC TCAACGCCTA
0421 CAAGACGTTC CAGCCATGTG ACCTGCTCGA CGCCATGTCC TCCTCGTCGT CCGACAAGGA
0481 CTCGATGCCA TGCTACGGCA |
Assemble Data |
5263R-2.IR_full 1 CGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAGATGCAGCCAACCAC 60
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5263R-2.in silico 1 CGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAGATGCAGCCAACCAC 60
5263R-2.IR_full 61 ATCAACGCCTACTGCAGCCCACAAGGAGGCCACATCAACGGCCACGACGACGGCGACATA 120
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5263R-2.in silico 61 ATCAACGCCTACTGCAGCCCACAAGGAGGCCACATCAACGGCCACGACGACGGCGACATA 120
5263R-2.IR_full 121 CGCCAATGGCAATCCCAATTCTAACGCCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCT 180
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5263R-2.in silico 121 CGCCAATGGCAATCCCAATTCTAACGCCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCT 180
5263R-2.IR_full 181 GTTTTGCGAGCAGGTGACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCG 240
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5263R-2.in silico 181 GTTTTGCGAGCAGGTGACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCG 240
5263R-2.IR_full 241 AACCGTCGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTCTACA 300
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5263R-2.in silico 241 AACCGTCGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTCTACA 300
5263R-2.IR_full 301 GTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCGCAGACCAATCTGAGCAG 360
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5263R-2.in silico 301 GTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAGACCAATCTGAGCAG 360
5263R-2.IR_full 361 CGTGGTTATTGACATCAATGCCAACAATCCGGTGTACCTGCAGAATCTACTCAACGCCTA 420
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5263R-2.in silico 361 CGTGGTTATTGACATCAATGCCAACAATCCGGTGTACCTGCAGAATCTACTCAACGCCTA 420
5263R-2.IR_full 421 CAAGACGTTCCAGCCATGTGACCTGCTCGACGCCATGTCCTCCTCGTCGTCCGACAAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
5263R-2.in silico 421 CAAGACGTTCCAGCCATGTGACCTGCTCGACGCCATGTCCTCCTCGTCGTCCGACAAGGA 480
5263R-2.IR_full 481 CTCGATGCCATGCTACGGCA 500
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5263R-2.in silico 481 CTCGATGCCATGCTACGGCA 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_168309.1 |
CG5263-RB, transcript variant B (smg), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_079263.2 |
CG5263-RA, transcript variant A (smg), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_168310.1 |
CG5263-RC, transcript variant C (smg), mRNA |
0 |
0 |
3 |
2 |
4 |
NM_137119.2 |
CG10105-RA (CG10105), mRNA |
0 |
0 |
2 |
5 |
10 |
NM_057357.2 |
CG1569-RA (rod), mRNA |
0 |
0 |
2 |
4 |
8 |
NM_167644.1 |
CG32536-RA (CG32536), mRNA |
0 |
0 |
2 |
4 |
5 |
NM_139375.1 |
CG12105-RA (CG12105), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_142027.2 |
CG9799-RA (CG9799), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_168494.1 |
CG32098-RA (CG32098), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_130505.2 |
CG13359-RA (CG13359), mRNA |
0 |
0 |
1 |
6 |
4 |
NM_132464.2 |
CG1908-RA (CG1908), mRNA |
0 |
0 |
1 |
5 |
16 |
NM_057643.2 |
CG10844-RA, transcript variant A (Rya-r44F), mRNA |
0 |
0 |
1 |
5 |
16 |
NM_057644.2 |
CG10844-RB, transcript variant B (Rya-r44F), mRNA |
0 |
0 |
1 |
5 |
16 |
NM_057645.2 |
CG10844-RC, transcript variant C (Rya-r44F), mRNA |
0 |
0 |
1 |
5 |
16 |
NM_057646.2 |
CG10844-RD, transcript variant D (Rya-r44F), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_143816.2 |
CG2987-RA, transcript variant A (alpha-catenin-related), mRNA |
0 |
0 |
1 |
5 |
9 |
NM_166641.1 |
CG2987-RB, transcript variant B (alpha-catenin-related), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_001042852.1 |
CG12500-RB, transcript variant B (stnA), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_001042851.1 |
CG12500-RA, transcript variant A (stnA), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_001042854.1 |
CG12473-RB, transcript variant B (stnB), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_001042853.1 |
CG12473-RA, transcript variant A (stnB), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_133124.1 |
CG7502-RA (CG7502), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_176776.2 |
CG14617-RB, transcript variant B (CG14617), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_078844.2 |
CG3688-RA (l(2)35Bd), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_001038769.1 |
CG14617-RC, transcript variant C (CG14617), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_176775.1 |
CG14617-RA, transcript variant A (CG14617), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_001038768.1 |
CG14617-RD, transcript variant D (CG14617), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_167858.1 |
CG32335-RA (CG32335), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_001038770.1 |
CG14617-RE, transcript variant E (CG14617), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_001014624.1 |
CG33555-RC, transcript variant C (btsz), mRNA |
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