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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5263R-2 
 Symbol smg  Full Name smaug 
 CG No CG5263  Old CG No CG5263 
 Synonyms Smg, unnamed, D69, anonD69, anon-D69, CG5263, smg, SMG 
 Accession No (Link to NCBI) NM_079263.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Park J, Lee J, Kim JH, Lee J, Park H, Lim C.
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.
Nucleic Acids Res (2021) 49(19) 11294-11311 [ PubMed ID = 34551427 ] [ RRC reference ]

Olesnicky EC, Killian DJ, Garcia E, Morton MC, Rathjen AR, Sola IE, Gavis ER.
Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis.
G3 (Bethesda) (2014) 4(2) 297-306 [ PubMed ID = 24347626 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGGCATCAGCGGCCAAACCAA 
 Primer Seq. 3'
aatctagaggtaccTGCCGTAGCATGGCATCGAGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGGCATCAGC GGCCAAACCA ATAACTCTAA CAGTGCATCC AACGAGATGC AGCCAACCAC 
0061 ATCAACGCCT ACTGCAGCCC ACAAGGAGGC CACATCAACG GCCACGACGA CGGCGACATA 
0121 CGCCAATGGC AATCCCAATT CTAACGCCAA TCCCAGCCAG AGCCAGCCGT CCAATGCGCT 
0181 GTTTTGCGAG CAGGTGACCA CAGTGACAAA TCTCTTCGAG AAGTGGAACG ACTGCGAGCG 
0241 AACCGTCGTG ATGTACGCGC TGCTCAAGCG GCTGCGCTAC CCGAGCCTCA AGTTTCTACA 
0301 GTATTCTATC GACAGCAACC TGACCCAGAA CCTGGGCACC TCGCAGACCA ATCTGAGCAG 
0361 CGTGGTTATT GACATCAATG CCAACAATCC GGTGTACCTG CAGAATCTAC TCAACGCCTA 
0421 CAAGACGTTC CAGCCATGTG ACCTGCTCGA CGCCATGTCC TCCTCGTCGT CCGACAAAGA 
0481 CTCGATGCCA TGCTACGGCA  
 in silico PCR Fragment
0001 CGGCATCAGC GGCCAAACCA ATAACTCTAA CAGTGCATCC AACGAGATGC AGCCAACCAC 
0061 ATCAACGCCT ACTGCAGCCC ACAAGGAGGC CACATCAACG GCCACGACGA CGGCGACATA 
0121 CGCCAATGGC AATCCCAATT CTAACGCCAA TCCCAGCCAG AGCCAGCCGT CCAATGCGCT 
0181 GTTTTGCGAG CAGGTGACCA CAGTGACAAA TCTCTTCGAG AAGTGGAACG ACTGCGAGCG 
0241 AACCGTCGTG ATGTACGCGC TGCTCAAGCG GCTGCGCTAC CCGAGCCTCA AGTTTCTACA 
0301 GTATTCTATC GACAGCAACC TGACCCAGAA CCTGGGCACC TCCCAGACCA ATCTGAGCAG 
0361 CGTGGTTATT GACATCAATG CCAACAATCC GGTGTACCTG CAGAATCTAC TCAACGCCTA 
0421 CAAGACGTTC CAGCCATGTG ACCTGCTCGA CGCCATGTCC TCCTCGTCGT CCGACAAGGA 
0481 CTCGATGCCA TGCTACGGCA  
 Assemble Data

5263R-2.IR_full       1   CGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAGATGCAGCCAACCAC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5263R-2.in silico     1   CGGCATCAGCGGCCAAACCAATAACTCTAACAGTGCATCCAACGAGATGCAGCCAACCAC 60


5263R-2.IR_full       61  ATCAACGCCTACTGCAGCCCACAAGGAGGCCACATCAACGGCCACGACGACGGCGACATA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5263R-2.in silico     61  ATCAACGCCTACTGCAGCCCACAAGGAGGCCACATCAACGGCCACGACGACGGCGACATA 120


5263R-2.IR_full       121 CGCCAATGGCAATCCCAATTCTAACGCCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5263R-2.in silico     121 CGCCAATGGCAATCCCAATTCTAACGCCAATCCCAGCCAGAGCCAGCCGTCCAATGCGCT 180


5263R-2.IR_full       181 GTTTTGCGAGCAGGTGACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5263R-2.in silico     181 GTTTTGCGAGCAGGTGACCACAGTGACAAATCTCTTCGAGAAGTGGAACGACTGCGAGCG 240


5263R-2.IR_full       241 AACCGTCGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTCTACA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5263R-2.in silico     241 AACCGTCGTGATGTACGCGCTGCTCAAGCGGCTGCGCTACCCGAGCCTCAAGTTTCTACA 300


5263R-2.IR_full       301 GTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCGCAGACCAATCTGAGCAG 360
                          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
5263R-2.in silico     301 GTATTCTATCGACAGCAACCTGACCCAGAACCTGGGCACCTCCCAGACCAATCTGAGCAG 360


5263R-2.IR_full       361 CGTGGTTATTGACATCAATGCCAACAATCCGGTGTACCTGCAGAATCTACTCAACGCCTA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5263R-2.in silico     361 CGTGGTTATTGACATCAATGCCAACAATCCGGTGTACCTGCAGAATCTACTCAACGCCTA 420


5263R-2.IR_full       421 CAAGACGTTCCAGCCATGTGACCTGCTCGACGCCATGTCCTCCTCGTCGTCCGACAAAGA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
5263R-2.in silico     421 CAAGACGTTCCAGCCATGTGACCTGCTCGACGCCATGTCCTCCTCGTCGTCCGACAAGGA 480


5263R-2.IR_full       481 CTCGATGCCATGCTACGGCA 500
                          ||||||||||||||||||||
5263R-2.in silico     481 CTCGATGCCATGCTACGGCA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168309.1  CG5263-RB, transcript variant B (smg), mRNA 
100   482  NM_079263.2  CG5263-RA, transcript variant A (smg), mRNA 
100   482  NM_168310.1  CG5263-RC, transcript variant C (smg), mRNA 
0   NM_137119.2  CG10105-RA (CG10105), mRNA 
0   10  NM_057357.2  CG1569-RA (rod), mRNA 
0   NM_167644.1  CG32536-RA (CG32536), mRNA 
0   NM_139375.1  CG12105-RA (CG12105), mRNA 
0   NM_142027.2  CG9799-RA (CG9799), mRNA 
0   NM_168494.1  CG32098-RA (CG32098), mRNA 
0   NM_130505.2  CG13359-RA (CG13359), mRNA 
0   NM_132464.2  CG1908-RA (CG1908), mRNA 
0   16  NM_057643.2  CG10844-RA, transcript variant A (Rya-r44F), mRNA 
0   16  NM_057644.2  CG10844-RB, transcript variant B (Rya-r44F), mRNA 
0   16  NM_057645.2  CG10844-RC, transcript variant C (Rya-r44F), mRNA 
0   16  NM_057646.2  CG10844-RD, transcript variant D (Rya-r44F), mRNA 
0   NM_143816.2  CG2987-RA, transcript variant A (alpha-catenin-related), mRNA 
0   NM_166641.1  CG2987-RB, transcript variant B (alpha-catenin-related), mRNA 
0   NM_001042852.1  CG12500-RB, transcript variant B (stnA), mRNA 
0   NM_001042851.1  CG12500-RA, transcript variant A (stnA), mRNA 
0   NM_001042854.1  CG12473-RB, transcript variant B (stnB), mRNA 
0   NM_001042853.1  CG12473-RA, transcript variant A (stnB), mRNA 
0   NM_133124.1  CG7502-RA (CG7502), mRNA 
0   NM_176776.2  CG14617-RB, transcript variant B (CG14617), mRNA 
0   NM_078844.2  CG3688-RA (l(2)35Bd), mRNA 
0   NM_001038769.1  CG14617-RC, transcript variant C (CG14617), mRNA 
0   NM_176775.1  CG14617-RA, transcript variant A (CG14617), mRNA 
0   NM_001038768.1  CG14617-RD, transcript variant D (CG14617), mRNA 
0   NM_167858.1  CG32335-RA (CG32335), mRNA 
0   NM_001038770.1  CG14617-RE, transcript variant E (CG14617), mRNA 
0   NM_001014624.1  CG33555-RC, transcript variant C (btsz), mRNA 

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