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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4432R-2 |
Symbol |
PGRP-LC |
Full Name |
Peptidoglycan recognition protein LC |
CG No |
CG4432 |
Old CG No |
CG4432 |
Synonyms |
CG4432, ird7, PGRP-LCx, PGRP-LCa, tot, PGRP-LC, (PGRP)-LC |
Accession No (Link to NCBI) |
NM_168324.2 |
Inserted Chr. |
lll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Zaidman-Rémy A, Hervé M, Poidevin M, Pili-Floury S, Kim MS, Blanot D, Oh BH, Ueda R, Mengin-Lecreulx D, Lemaitre B. The Drosophila amidase PGRP-LB modulates the immune response to bacterial infection. Immunity (2006) 24(4) 463-73
[
PubMed ID = 16618604
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCTTCGCCGGCGGTTTCCATA |
Primer Seq. 3' |
aatctagaggtaccCCACCATTGAATGCGGGGTTA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TCTTCGCCGG CGGTTTCCAT ACGGAGtACC ACAATTTCCG TTGTGTCCAT CGATGATAAT
0061 GCCATCGACT CGAGTAGTAT TGATAGTGAT TCGGAGGCCG AAGCGGAGGA TTATACGGTC
0121 CAGAAGCTGG GTCACCAGGT CACCTACCCG CCCAACAGTT CACACCTGCG CGACCTTAAC
0181 CAGGGTCTAA CGGTGATCAG TCGTCATGTG GCGCCAGGTG AGGCGGCAGT ACCACCACCC
0241 AATCCCCTGG AAGCTGGCAT TGTGGcCAAG CAAATACTGA ACGGTAATCT GGCCGTGgCC
0301 ACGCCCACAT CGCCGGcGGG CGGTGCCACG CAGGGTATTG GCAGCATCGC CCTGACCAAC
0361 TCCACAGATG TGACGTTCGG TGATAAGCAN TTCTACGAGG GACCCGTGAC GATACAACAG
0421 TTTCTCATCG ATAATCGGGA CAAGTGGAAA CCGGGCGAGG GACCAGCTGG TGGACAGGAT
0481 AACCCCGCAT TCAATGGTGG |
in silico PCR Fragment |
0001 TCTTCGCCGG CGGTTTCCAT ACGGAGTACC ACAATTTCCG TTGTGTCCAT CGATGATAAT
0061 GCCATCGACT CGAGTAGTAT TGATAGTGAT TCGGAGGCCG AAGCGGAGGA TTATACGGTC
0121 CAGAAGCTGG GTCACCAGGT CACCTACCCG CCCAACAGTT CACACCTGCG CGACCTTAAC
0181 CAGGGTCTAA CGGTGATCAG TCGCCATGTG GCGCCAGGTG AGGCGGCAGT ACCACCACCC
0241 AATCCCCTGG AAGCTGGCAT TGTGGCCAAG CAAATACTGA ACGGTAATCT GGCCGTGGCC
0301 ACGCCCACAT CGCCGGCGGG CGGTGCCACG CAGGGTATTG GCAGCATCGC CCTGACCAAC
0361 TCCACAGATG TGACGTTCGG TGATAAGCAT TTCTACGAGG GACCCGTGAC GATACAACAG
0421 TTTCTCATCG ATAATCGGGA CAAGTGGAAA CCGGGCGAGG GACCAGCTGG TGGACAGGAT
0481 AACCCCGCAT TCAATGGTGG |
Assemble Data |
4432R-2.IR_full 1 TCTTCGCCGGCGGTTTCCATACGGAGTACCACAATTTCCGTTGTGTCCATCGATGATAAT 60
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4432R-2.in silico 1 TCTTCGCCGGCGGTTTCCATACGGAGTACCACAATTTCCGTTGTGTCCATCGATGATAAT 60
4432R-2.IR_full 61 GCCATCGACTCGAGTAGTATTGATAGTGATTCGGAGGCCGAAGCGGAGGATTATACGGTC 120
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4432R-2.in silico 61 GCCATCGACTCGAGTAGTATTGATAGTGATTCGGAGGCCGAAGCGGAGGATTATACGGTC 120
4432R-2.IR_full 121 CAGAAGCTGGGTCACCAGGTCACCTACCCGCCCAACAGTTCACACCTGCGCGACCTTAAC 180
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4432R-2.in silico 121 CAGAAGCTGGGTCACCAGGTCACCTACCCGCCCAACAGTTCACACCTGCGCGACCTTAAC 180
4432R-2.IR_full 181 CAGGGTCTAACGGTGATCAGTCGTCATGTGGCGCCAGGTGAGGCGGCAGTACCACCACCC 240
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4432R-2.in silico 181 CAGGGTCTAACGGTGATCAGTCGCCATGTGGCGCCAGGTGAGGCGGCAGTACCACCACCC 240
4432R-2.IR_full 241 AATCCCCTGGAAGCTGGCATTGTGGCCAAGCAAATACTGAACGGTAATCTGGCCGTGGCC 300
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4432R-2.in silico 241 AATCCCCTGGAAGCTGGCATTGTGGCCAAGCAAATACTGAACGGTAATCTGGCCGTGGCC 300
4432R-2.IR_full 301 ACGCCCACATCGCCGGCGGGCGGTGCCACGCAGGGTATTGGCAGCATCGCCCTGACCAAC 360
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4432R-2.in silico 301 ACGCCCACATCGCCGGCGGGCGGTGCCACGCAGGGTATTGGCAGCATCGCCCTGACCAAC 360
4432R-2.IR_full 361 TCCACAGATGTGACGTTCGGTGATAAGCANTTCTACGAGGGACCCGTGACGATACAACAG 420
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4432R-2.in silico 361 TCCACAGATGTGACGTTCGGTGATAAGCATTTCTACGAGGGACCCGTGACGATACAACAG 420
4432R-2.IR_full 421 TTTCTCATCGATAATCGGGACAAGTGGAAACCGGGCGAGGGACCAGCTGGTGGACAGGAT 480
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4432R-2.in silico 421 TTTCTCATCGATAATCGGGACAAGTGGAAACCGGGCGAGGGACCAGCTGGTGGACAGGAT 480
4432R-2.IR_full 481 AACCCCGCATTCAATGGTGG 500
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4432R-2.in silico 481 AACCCCGCATTCAATGGTGG 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
8 |
NM_140041.2 |
CG4432-RB, transcript variant B (PGRP-LC), mRNA |
100 |
482 |
0 |
0 |
8 |
NM_206308.2 |
CG4432-RC, transcript variant C (PGRP-LC), mRNA |
100 |
482 |
0 |
0 |
8 |
NM_168324.2 |
CG4432-RA, transcript variant A (PGRP-LC), mRNA |
0.41 |
2 |
2 |
2 |
3 |
NM_080421.3 |
CG18730-RA (Amy-p), mRNA |
0.41 |
2 |
2 |
2 |
3 |
NM_079044.1 |
CG17876-RA (Amy-d), mRNA |
0.2 |
1 |
2 |
3 |
3 |
NM_141657.2 |
CG8273-RA (CG8273), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_143306.2 |
CG13977-RA (Cyp6a18), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_141165.1 |
CG13239-RA (CG13239), mRNA |
0 |
0 |
2 |
2 |
6 |
NM_135169.2 |
CG9493-RA (Pez), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_079025.3 |
CG10248-RA (Cyp6a8), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_144472.2 |
CG1898-RA (HBS1), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_166535.1 |
CG4444-RA (px), mRNA |
0 |
0 |
1 |
4 |
7 |
NM_139595.2 |
CG1135-RA (CG1135), mRNA |
0 |
0 |
1 |
4 |
7 |
NM_057805.2 |
CG9660-RA, transcript variant A (toc), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_132619.1 |
CG2209-RA (CG2209), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_143465.1 |
CG1973-RA (CG1973), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_057676.3 |
CG11312-RA (insc), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_001014545.1 |
CG33519-RB (Unc-89), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140200.1 |
CG6175-RB (CG6175), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140393.2 |
CG10732-RB, transcript variant B (CG10732), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_168546.1 |
CG10732-RA, transcript variant A (CG10732), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_143996.1 |
CG13643-RA (CG13643), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142521.1 |
CG6026-RA (CG6026), mRNA |
0 |
0 |
0 |
6 |
21 |
NM_001032051.1 |
CG33715-RD, transcript variant D (Msp-300), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_142201.1 |
CG14868-RA (CG14868), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_165034.1 |
CG6043-RA, transcript variant A (CG6043), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_165037.1 |
CG6043-RC, transcript variant C (CG6043), mRNA |
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