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NIG-RNAi Strains Detail |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4244R-1 |
Symbol |
Su(dx) |
Full Name |
Suppressor of deltex |
CG No |
CG4244 |
Old CG No |
CG4244 |
Synonyms |
Su(deltex), Su(Dx), CG4244, anon-WO0073329.4, anon-WO0073329.2, anon-WO0073329.1, Su(dx) |
Accession No (Link to NCBI) |
NM_164448.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
larval lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Huang S, Zhang Z, Zhang C, Lv X, Zheng X, Chen Z, Sun L, Wang H, Zhu Y, Zhang J, Yang S, Lu Y, Sun Q, Tao Y, Liu F, Zhao Y, Chen D. Activation of Smurf E3 ligase promoted by smoothened regulates hedgehog signaling through targeting patched turnover. PLoS Biol (2013) 11(11) e1001721
[
PubMed ID = 24302888
]
[
RRC reference
]
Du J, Zhang J, Su Y, Liu M, Ospina JK, Yang S, Zhu AJ. In vivo RNAi screen reveals neddylation genes as novel regulators of Hedgehog signaling. PLoS One (2011) 6(9) e24168
[
PubMed ID = 21931660
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
Casso DJ, Biehs B, Kornberg TB. A novel interaction between hedgehog and Notch promotes proliferation at the anterior-posterior organizer of the Drosophila wing. Genetics (2011) 187(2) 485-99
[
PubMed ID = 21098717
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCCAGTGGGAGTGCCAATCAAG |
Primer Seq. 3' |
aatctagaggtaccACTGACCACCGACGGATTGAC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CCAGTGGGAG TGCCAATCAA GGATATCATC AATTAAGCGT GACAATCGAG GAGGCTTCGC
0061 TGCGCAACAA TGGCTTCCTC AAGCCAAATC CCTACGTGGA GCTCTTGATT GACAGCAAAA
0121 GCAAGCGGAA AACGGACCTG GTGAAGAACA GCTATTTGCC CAAGTGGAAC GAGGAGTTTC
0181 ACAGTGCTGA TTACACCCAA TTCAACGCTG CACTTCAAAG TGCTGGATCA CTCCAGTTTC
0241 CGTAAAGATG CCATGCTTGG AGAGCGGATC ATCAACCTGG CGCACATTCT GCAGCACTAC
0301 AATGGGCGGT GCGAGTTCCT TGAGCTGACC ATCGACCTGT TCGTCACCAG CAAGTCGGAC
0361 AATCGCCAGA CGAAGAGCGG CGAACTAGTg GCCATCCTCA ATGGCCTCAA ACTCGATATG
0421 AGCAAGCTGC AGATTCAgCC AGTGGCTGGC CAACAGAATG GCAATCCAcC CGTCCAGGCG
0481 GTCAATCCGT CGGTGGTCAG T |
in silico PCR Fragment |
0001 CCAGTGGGAG TGCCAATCAA GGATATCATC AATTAAGCGT GACAATCGAG GAGGCTTCGC
0061 TGCGCAACAA TGGCTTCCTC AAGCCAAATC CCTACGTGGA GCTCTTGATT GACAGCAAAA
0121 GCAAGCGGAA AACGGACCTG GTGAAGAACA GCTATTTGCC CAAGTGGAAC GAGGAG-TTC
0181 ACAGTGCTGA TTACACCCAA TTCAACGCTG CACTTCAAAG TGCTGGATCA CTCCAGTTTC
0241 CGTAAAGATG CCATGCTTGG AGAGCGGATC ATCAACCTGG CGCACATTCT GCAGCACTAC
0301 AATGGGCGGT GCGAGTTCCT TGAGCTGACC ATCGACCTGT TCGTCACCAG CAAGTCGGAC
0361 AATCGCCAGA CGAAGAGCGG CGAACTAGTG GCCATCCTCA ATGGCCTCAA ACTCGATATG
0421 AGCAAGCTGC AGATTCAGCC AGTGGCTGGC CAACAGAATG GCAATCCACC CGTCCAGGCG
0481 GTCAATCCGT CGGTGGTCAG T |
Assemble Data |
4244R-1.IR_full 1 CCAGTGGGAGTGCCAATCAAGGATATCATCAATTAAGCGTGACAATCGAGGAGGCTTCGC 60
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4244R-1.in silico 1 CCAGTGGGAGTGCCAATCAAGGATATCATCAATTAAGCGTGACAATCGAGGAGGCTTCGC 60
4244R-1.IR_full 61 TGCGCAACAATGGCTTCCTCAAGCCAAATCCCTACGTGGAGCTCTTGATTGACAGCAAAA 120
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4244R-1.in silico 61 TGCGCAACAATGGCTTCCTCAAGCCAAATCCCTACGTGGAGCTCTTGATTGACAGCAAAA 120
4244R-1.IR_full 121 GCAAGCGGAAAACGGACCTGGTGAAGAACAGCTATTTGCCCAAGTGGAACGAGGAGTTTC 180
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4244R-1.in silico 121 GCAAGCGGAAAACGGACCTGGTGAAGAACAGCTATTTGCCCAAGTGGAACGAGGAG-TTC 180
4244R-1.IR_full 181 ACAGTGCTGATTACACCCAATTCAACGCTGCACTTCAAAGTGCTGGATCACTCCAGTTTC 240
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4244R-1.in silico 181 ACAGTGCTGATTACACCCAATTCAACGCTGCACTTCAAAGTGCTGGATCACTCCAGTTTC 240
4244R-1.IR_full 241 CGTAAAGATGCCATGCTTGGAGAGCGGATCATCAACCTGGCGCACATTCTGCAGCACTAC 300
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4244R-1.in silico 241 CGTAAAGATGCCATGCTTGGAGAGCGGATCATCAACCTGGCGCACATTCTGCAGCACTAC 300
4244R-1.IR_full 301 AATGGGCGGTGCGAGTTCCTTGAGCTGACCATCGACCTGTTCGTCACCAGCAAGTCGGAC 360
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4244R-1.in silico 301 AATGGGCGGTGCGAGTTCCTTGAGCTGACCATCGACCTGTTCGTCACCAGCAAGTCGGAC 360
4244R-1.IR_full 361 AATCGCCAGACGAAGAGCGGCGAACTAGTGGCCATCCTCAATGGCCTCAAACTCGATATG 420
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4244R-1.in silico 361 AATCGCCAGACGAAGAGCGGCGAACTAGTGGCCATCCTCAATGGCCTCAAACTCGATATG 420
4244R-1.IR_full 421 AGCAAGCTGCAGATTCAGCCAGTGGCTGGCCAACAGAATGGCAATCCACCCGTCCAGGCG 480
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4244R-1.in silico 421 AGCAAGCTGCAGATTCAGCCAGTGGCTGGCCAACAGAATGGCAATCCACCCGTCCAGGCG 480
4244R-1.IR_full 481 GTCAATCCGTCGGTGGTCAGT 501
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4244R-1.in silico 481 GTCAATCCGTCGGTGGTCAGT 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
3 |
NM_164448.1 |
CG4244-RA, transcript variant A (Su(dx)), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_057405.2 |
CG4244-RB, transcript variant B (Su(dx)), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_164449.1 |
CG4244-RC, transcript variant C (Su(dx)), mRNA |
0.82 |
4 |
3 |
3 |
3 |
NM_136060.1 |
CG10348-RA (CG10348), mRNA |
0 |
0 |
5 |
3 |
6 |
NM_139839.3 |
CG32381-RA (unc-13-4A), mRNA |
0 |
0 |
3 |
4 |
3 |
NM_142524.2 |
CG6040-RA (CG6040), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_135554.2 |
CG5300-RA (Klp31E), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_206418.2 |
CG14575-RB (capaR), mRNA |
0 |
0 |
2 |
4 |
5 |
NM_134516.2 |
CG32529-RA, transcript variant A (CG32529), mRNA |
0 |
0 |
2 |
4 |
5 |
NM_001038766.1 |
CG32529-RD, transcript variant D (CG32529), mRNA |
0 |
0 |
2 |
4 |
5 |
NM_167688.1 |
CG32529-RC, transcript variant C (CG32529), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_170642.1 |
CG32464-RI, transcript variant I (l(3)82Fd), mRNA |
0 |
0 |
1 |
7 |
5 |
NM_134544.1 |
CG11734-RB (HERC2), mRNA |
0 |
0 |
1 |
4 |
7 |
NM_134904.2 |
CG3523-RA (CG3523), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_136583.2 |
CG8232-RA (CG8232), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_168389.1 |
CG6707-RB, transcript variant B (CG6707), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_206777.1 |
CG5659-RC, transcript variant C (ari-1), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_167610.3 |
CG5659-RB, transcript variant B (ari-1), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_078675.3 |
CG5659-RA, transcript variant A (ari-1), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_168388.1 |
CG6707-RC, transcript variant C (CG6707), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_140115.1 |
CG6707-RA, transcript variant A (CG6707), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_138090.1 |
CG12252-RA (CG12252), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_135971.1 |
CG13283-RA (CG13283), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_079513.2 |
CG1088-RB, transcript variant B (Vha26), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_169073.1 |
CG1088-RA, transcript variant A (Vha26), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_140130.1 |
CG8065-RA (CG8065), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079619.2 |
CG9829-RA (poly), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166671.1 |
CG30164-RA (CG30164), mRNA |
0 |
0 |
0 |
8 |
4 |
NM_130684.1 |
CG3598-RA (CG3598), mRNA |
0 |
0 |
0 |
8 |
3 |
NM_143034.3 |
CG5808-RA (CG5808), mRNA |
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