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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4119R-2 
 Symbol CG4119  Full Name CG4119 
 CG No CG4119  Old CG No CG4119 
 Synonyms BcDNA:LD23634, cg4119, CG4119 
 Accession No (Link to NCBI) NM_132014.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Olesnicky EC, Killian DJ, Garcia E, Morton MC, Rathjen AR, Sola IE, Gavis ER.
Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis.
G3 (Bethesda) (2014) 4(2) 297-306 [ PubMed ID = 24347626 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCATGCCGCCCTTCATGAATA 
 Primer Seq. 3'
aatctagaggtaccGCTTGTGCTCTTCCAGGAATT 
 Predicted Fragment Size
501 
 IR fragment full Seq
0001 CCCTGCCATC GCCCTTCATG AATACAGCCA TACCGCCGCC GCACATAATG CAGAACATGG 
0061 CCAAGCCGCC GAGGAGCTTC CGTAACTCGG CCACCATTAG HTCACAGCAC GACAGATATA 
0121 CCAACGTCCG CCGGAGCCGC AACCACAGTT CCGCGGACCC ATCATTACCG TCTGTCGTGG 
0181 GCAACATCAG CGAACGCGTC CCGGNGGCAC TGCTCAAACG CATCCTGAAC GCTATTATGC 
0241 GGCGTGGTAA TCAATTGGAA ACGGGTGTCC ACATTCGGCT TCTGCGAATT TGACGGACCT 
0301 ATTGCGGCAA TGCGAGCCGT TCGCCTGCTC AGCGAGATGG ACAATCGATG GCAAGAAGCT 
0361 NGTAGCCAAG GTAGATGCCA AGAACAAGGT TCTCATCGAG GATTACAAGG AGCAGGAGTG 
0421 CAAGAACGGC GATCGTTCCA ACCCAGTGGA CGAAAAGACC GAGGACGAGT TCGCCATTGC 
0481 CCAGATGCAC GAATTCCTGG AAGAGCGGAC AAGC 
 in silico PCR Fragment
0001 CCATGC---C GCCCTTCATG AATACAGCCA TACCGCCGCC GCACATAATG CAGAACATGG 
0061 CCAAGCCGCC GAGGAGCTTC CGTAACTCGG CCACCATTAG TTCACAGC-C GACAG-TATA 
0121 CCAACGTCCG CCGGAGCCGC AACCACAGTT CCGCGGACCC ATCATTACCG TCT-TCGTGG 
0181 GCAACATCAG CGAACGCGTC CCGGAGGCAC TGCTCAAACG CATCCTGAAC GCT----TGC 
0241 GGCGTGGTAA TCAATTGGAA ACGGGTGTCC ACATTCGGCT TCTGCGAATT TGACGGACCT 
0301 ATTGCGGCAA TGCGAGCCGT TCGCCTGCTC AGCGAGATGG A-AATCGATG GCAAGAAGCT 
0361 GGTAGCCAAG GTAGATGCCA AGAACAAGGT TCTCATCGAG GATTACAAGG AGCAGGAGTG 
0421 CAAGAACGGC GATCGTTCCA ACCCAGTGGA CGAAAAGACC GAGGACGAGT TCGCCATTGC 
0481 CCAGATGCAC GAATTCCTGG AAGAGC--AC AAGC 
 Assemble Data

4119R-2.IR_full       1   CCCTGCCATCGCCCTTCATGAATACAGCCATACCGCCGCCGCACATAATGCAGAACATGG 60
                          || |||   |||||||||||||||||||||||||||||||||||||||||||||||||||
4119R-2.in silico     1   CCATGC---CGCCCTTCATGAATACAGCCATACCGCCGCCGCACATAATGCAGAACATGG 60


4119R-2.IR_full       61  CCAAGCCGCCGAGGAGCTTCCGTAACTCGGCCACCATTAGHTCACAGCACGACAGATATA 120
                          |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
4119R-2.in silico     61  CCAAGCCGCCGAGGAGCTTCCGTAACTCGGCCACCATTAGTTCACAGC-CGACAG-TATA 120


4119R-2.IR_full       121 CCAACGTCCGCCGGAGCCGCAACCACAGTTCCGCGGACCCATCATTACCGTCTGTCGTGG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
4119R-2.in silico     121 CCAACGTCCGCCGGAGCCGCAACCACAGTTCCGCGGACCCATCATTACCGTCT-TCGTGG 180


4119R-2.IR_full       181 GCAACATCAGCGAACGCGTCCCGGNGGCACTGCTCAAACGCATCCTGAACGCTATTATGC 240
                          |||||||||||||||||||||||| ||||||||||||||||||||||||||||    |||
4119R-2.in silico     181 GCAACATCAGCGAACGCGTCCCGGAGGCACTGCTCAAACGCATCCTGAACGCT----TGC 240


4119R-2.IR_full       241 GGCGTGGTAATCAATTGGAAACGGGTGTCCACATTCGGCTTCTGCGAATTTGACGGACCT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4119R-2.in silico     241 GGCGTGGTAATCAATTGGAAACGGGTGTCCACATTCGGCTTCTGCGAATTTGACGGACCT 300


4119R-2.IR_full       301 ATTGCGGCAATGCGAGCCGTTCGCCTGCTCAGCGAGATGGACAATCGATGGCAAGAAGCT 360
                          ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
4119R-2.in silico     301 ATTGCGGCAATGCGAGCCGTTCGCCTGCTCAGCGAGATGGA-AATCGATGGCAAGAAGCT 360


4119R-2.IR_full        361 GTAGCCAAGGTAGATGCCAAGAACAAGGTTCTCATCGAGGATTACAAGGAGCAGGAGTG 419
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4119R-2.in silico      361 GTAGCCAAGGTAGATGCCAAGAACAAGGTTCTCATCGAGGATTACAAGGAGCAGGAGTG 419


4119R-2.IR_full       421 CAAGAACGGCGATCGTTCCAACCCAGTGGACGAAAAGACCGAGGACGAGTTCGCCATTGC 479
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4119R-2.in silico     421 CAAGAACGGCGATCGTTCCAACCCAGTGGACGAAAAGACCGAGGACGAGTTCGCCATTGC 479


4119R-2.IR_full       481 CCAGATGCACGAATTCCTGGAAGAGCGGACAAGC 513
                          ||||||||||||||||||||||||||  ||||||
4119R-2.in silico     481 CCAGATGCACGAATTCCTGGAAGAGC--ACAAGC 513

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   483  NM_132014.2  CG4119-RA (CG4119), mRNA 
0.2   NM_143175.1  CG17770-RA (CG17770), mRNA 
0   NM_143225.2  CG6490-RA (CG6490), mRNA 
0   NM_143426.2  CG14508-RA (CG14508), mRNA 
0   NM_135893.1  CG4103-RA (CG4103), mRNA 
0   10  NM_078859.2  CG5813-RA, transcript variant A (chif), mRNA 
0   NM_078706.2  CG1403-RA, transcript variant A (Sep1), mRNA 
0   NM_057219.3  CG9042-RA, transcript variant A (Gpdh), mRNA 
0   NM_057217.3  CG9042-RB, transcript variant B (Gpdh), mRNA 
0   NM_057218.3  CG9042-RC, transcript variant C (Gpdh), mRNA 
0   NM_057358.3  CG3180-RA (RpII140), mRNA 
0   NM_130535.2  CG11380-RA (CG11380), mRNA 
0   NM_167269.1  CG1453-RD, transcript variant D (Klp10A), mRNA 
0   NM_167270.1  CG1453-RE, transcript variant E (Klp10A), mRNA 
0   NM_167268.1  CG1453-RC, transcript variant C (Klp10A), mRNA 
0   NM_167267.1  CG1453-RB, transcript variant B (Klp10A), mRNA 
0   NM_132459.2  CG1453-RA, transcript variant A (Klp10A), mRNA 
0   NM_136284.2  CG11634-RA (CG11634), mRNA 
0   NM_140268.1  CG7257-RA (CG7257), mRNA 
0   NM_140463.3  CG9384-RA (CG9384), mRNA 
0   NM_080194.3  CG4195-RA (l(3)73Ah), mRNA 
0   NM_078797.2  CG13109-RA (tai), mRNA 
0   NM_164989.1  CG7061-RB, transcript variant B (rab3-GAP), mRNA 
0   NM_137356.1  CG10950-RA (CG10950), mRNA 
0   NM_135700.3  CG7061-RA, transcript variant A (rab3-GAP), mRNA 
0   NM_132058.2  CG5966-RA (CG5966), mRNA 
0   NM_176685.1  CG33080-RA, transcript variant A (CG33080), mRNA 
0   NM_176686.1  CG33080-RB, transcript variant B (CG33080), mRNA 
0   NM_167704.1  CG11710-RA, transcript variant A (CG11710), mRNA 
0   NM_134549.2  CG11710-RB, transcript variant B (CG11710), mRNA 

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